Difference between revisions of "MANNPDEHYDROG-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1321 RXN-1321] == * direction: ** LEFT-TO-RIGHT * common name: ** Lipoxygenase * ec number: **...")
(Created page with "Category:Gene == Gene Ec-11_003750 == * left end position: ** 3790542 * transcription direction: ** POSITIVE * right end position: ** 3803178 * centisome position: ** 60.2...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1321 RXN-1321] ==
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== Gene Ec-11_003750 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 3790542
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* common name:
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* transcription direction:
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** Lipoxygenase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/1.13.11.12 EC-1.13.11.12]
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** 3803178
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* centisome position:
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** 60.26627   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0234_0006
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** Esi0234_0006
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** PAO2 C-terminus
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-13398]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[LINOLENIC_ACID]][c] '''=>''' 1 [[CPD-725]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 1 oxygen[c] '''+''' 1 α-linolenate[c] '''=>''' 1 13(S)-HPOTE[c]
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* Reaction: [[RXN-7676]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: go-term
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-7677]]
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* [[Ec-20_003620]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[aragem]]
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* [[Ec-03_000020]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-03_000010]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-20_003630]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY-5410]], traumatin and (Z)-3-hexen-1-yl acetate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5410 PWY-5410]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
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** '''10''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY-5068]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3790542}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34495 34495]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=3803178}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07869 R07869]
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{{#set: centisome position=60.26627    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Esi_0234_0006|Esi0234_0006|PAO2 C-terminus}}
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{{#set: common name=Lipoxygenase}}
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{{#set: reaction associated=RXN-13398|RXN-7676|RXN-7677}}
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{{#set: ec number=EC-1.13.11.12}}
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{{#set: pathway associated=PWY-5068}}
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{{#set: gene associated=Ec-20_003620|Ec-03_000020|Ec-03_000010|Ec-20_003630}}
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{{#set: in pathway=PWY-5410|PWY-735}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 13:26, 21 March 2018

Gene Ec-11_003750

  • left end position:
    • 3790542
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3803178
  • centisome position:
    • 60.26627
  • Synonym(s):
    • Esi_0234_0006
    • Esi0234_0006
    • PAO2 C-terminus

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=MANNPDEHYDROG-RXN&oldid=18533"