Difference between revisions of "DEOXYINOSINE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Malate synthase * ec numb...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16016 RXN-16016] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16016 RXN-16016] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** Malate synthase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.3.9 EC-2.3.3.9]
+
** [http://enzyme.expasy.org/EC/2.3.1 EC-2.3.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ACETYL-COA]][c] '''+''' 1 [[GLYOX]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[MAL]][c]
+
** 14 [[NADPH]][c] '''+''' 9 [[MALONYL-COA]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 22 [[PROTON]][c] '''=>''' 1 [[ARACHIDONIC_ACID]][c] '''+''' 14 [[NADP]][c] '''+''' 8 [[WATER]][c] '''+''' 10 [[CO-A]][c] '''+''' 9 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 acetyl-CoA[c] '''+''' 1 glyoxylate[c] '''+''' 1 H2O[c] '''=>''' 1 coenzyme A[c] '''+''' 1 H+[c] '''+''' 1 (S)-malate[c]
+
** 14 NADPH[c] '''+''' 9 malonyl-CoA[c] '''+''' 1 acetyl-CoA[c] '''+''' 22 H+[c] '''=>''' 1 arachidonate[c] '''+''' 14 NADP+[c] '''+''' 8 H2O[c] '''+''' 10 coenzyme A[c] '''+''' 9 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-12_003860]]
 
−
** ESILICULOSUS_GENOME
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295]
+
* [[PWY-7583]], arachidonate biosynthesis II (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7583 PWY-7583]
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-7294]], xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294]
+
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
−
* [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXDEG-PWY GLYOXDEG-PWY]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
+
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
+
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
+
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
+
−
** '''11''' reactions found over '''18''' reactions in the full pathway
+
−
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
+
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[gap-filling]]
−
** Source: [[orthology-aragem]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[meneco]]
−
* Category: [[annotation]]
+
**** Comment: [[added for gapfilling]]
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18181 18181]
 
−
* PIR:
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P42450 P42450]
 
−
** [http://www.uniprot.org/uniprot/Q02216 Q02216]
 
−
** [http://www.uniprot.org/uniprot/P28344 P28344]
 
−
** [http://www.uniprot.org/uniprot/P28345 P28345]
 
−
** [http://www.uniprot.org/uniprot/P30952 P30952]
 
−
** [http://www.uniprot.org/uniprot/Q43827 Q43827]
 
−
** [http://www.uniprot.org/uniprot/P21826 P21826]
 
−
** [http://www.uniprot.org/uniprot/P37330 P37330]
 
−
** [http://www.uniprot.org/uniprot/P17432 P17432]
 
−
** [http://www.uniprot.org/uniprot/P17815 P17815]
 
−
** [http://www.uniprot.org/uniprot/P08997 P08997]
 
−
** [http://www.uniprot.org/uniprot/P21360 P21360]
 
−
** [http://www.uniprot.org/uniprot/P08216 P08216]
 
−
** [http://www.uniprot.org/uniprot/P13244 P13244]
 
−
** [http://www.uniprot.org/uniprot/P49081 P49081]
 
−
** [http://www.uniprot.org/uniprot/P45458 P45458]
 
−
** [http://www.uniprot.org/uniprot/O32913 O32913]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Malate synthase}}
+
{{#set: ec number=EC-2.3.1}}
−
{{#set: ec number=EC-2.3.3.9}}
+
{{#set: in pathway=PWY-7583}}
−
{{#set: gene associated=Ec-12_003860}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: in pathway=PWY-7295|PWY-7294|GLYOXDEG-PWY|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|PWY-7118}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 13:26, 21 March 2018

Reaction RXN-16016

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-7583, arachidonate biosynthesis II (bacteria): PWY-7583
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=DEOXYINOSINE&oldid=18536"