Difference between revisions of "Ec-22 001610"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] == * direction: ** LEFT-TO-RIG...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)
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** pseudouridine synthase
 +
** Pseudouridine synthase I, TruA, C-terminal
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.4.99.12 EC-5.4.99.12]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[AGMATINE-DEIMINASE-RXN]]
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** 1 [[tRNA-uridine-38-40]][c] '''=>''' 1 [[tRNA-pseudouridine-38-40]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-02_001540]]
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** 1 a uridine38-40 in tRNA[c] '''=>''' 1 a pseudouridine38-40 in tRNA[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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* [[N-CARBAMOYLPUTRESCINE-AMIDASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 associated gene(s):
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* Gene: [[Ec-05_002890]]
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*** [[Ec-16_003010]]
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** Source: [[annotation-esiliculosus_genome]]
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** 1 reconstruction source(s) associated:
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*** Assignment: GO-TERM
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*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-22_001870]]
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== Reaction(s) not found ==
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=ARGDECARBOX-RXN ARGDECARBOX-RXN]
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*** Assignment: GO-TERM
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* Gene: [[Ec-28_003620]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_000160]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-07_000310]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-27_004410]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-07_006750]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
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* Gene: [[Ec-26_004180]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
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* Gene: [[Ec-01_000690]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-27_005240]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-06_009680]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
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* Gene: [[Ec-09_003890]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_001350]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-08_003150]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_001540]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_001340]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
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* Gene: [[Ec-06_003220]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-20_000700]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-04_001540]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-06_004490]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-17_003530]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
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* Gene: [[Ec-21_005910]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-20_003420]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
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* Gene: [[Ec-19_003680]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-01_008790]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1224}}
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* LIGAND-RXN:
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{{#set: common name=L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03020 R03020]
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{{#set: reaction found=2}}
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* UNIPROT:
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{{#set: total reaction=3}}
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** [http://www.uniprot.org/uniprot/Q59069 Q59069]
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{{#set: completion rate=67.0}}
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** [http://www.uniprot.org/uniprot/P47428 P47428]
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** [http://www.uniprot.org/uniprot/P45291 P45291]
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** [http://www.uniprot.org/uniprot/Q45557 Q45557]
 +
** [http://www.uniprot.org/uniprot/Q50291 Q50291]
 +
** [http://www.uniprot.org/uniprot/P53167 P53167]
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** [http://www.uniprot.org/uniprot/Q12211 Q12211]
 +
** [http://www.uniprot.org/uniprot/P73295 P73295]
 +
** [http://www.uniprot.org/uniprot/P07649 P07649]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=pseudouridine synthase}}
 +
{{#set: common name=Pseudouridine synthase I, TruA, C-terminal}}
 +
{{#set: ec number=EC-5.4.99.12}}
 +
{{#set: gene associated=Ec-05_002890|Ec-22_001870|Ec-28_003620|Ec-14_000160|Ec-07_000310|Ec-27_004410|Ec-07_006750|Ec-26_004180|Ec-01_000690|Ec-27_005240|Ec-06_009680|Ec-09_003890|Ec-14_001350|Ec-08_003150|Ec-14_001540|Ec-14_001340|Ec-06_003220|Ec-20_000700|Ec-04_001540|Ec-06_004490|Ec-17_003530|Ec-21_005910|Ec-20_003420|Ec-19_003680|Ec-01_008790}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:27, 21 March 2018

Reaction TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • pseudouridine synthase
    • Pseudouridine synthase I, TruA, C-terminal
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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