Difference between revisions of "RXN-13008"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9003 RXN-9003] == * direction: ** LEFT-TO-RIGHT * common name: ** 4-hydroxybenzoate nonaprenylt...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9003 RXN-9003] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 4-hydroxybenzoate nonaprenyltransferase
+
** Aspartyl-tRNA synthetases
 +
** Aminoacyl-tRNA synthetase, class II (D/K/N)-like
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.39 EC-2.5.1.39]
+
** [http://enzyme.expasy.org/EC/6.1.1.12 EC-6.1.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[4-hydroxybenzoate]][c] '''+''' 1 [[ALL-TRANS-HEXAPRENYL-DIPHOSPHATE]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[3-HEXAPRENYL-4-HYDROXYBENZOATE]][c]
+
** 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 4-hydroxybenzoate[c] '''+''' 1 all-trans-hexaprenyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 3-hexaprenyl-4-hydroxybenzoate[c]
+
** 1 tRNAasp[c] '''+''' 1 ATP[c] '''+''' 1 L-aspartate[c] '''+''' 1 H+[c] '''=>''' 1 AMP[c] '''+''' 1 L-aspartyl-tRNAasp[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-18_000990]]
+
* Gene: [[Ec-06_003810]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-24_003910]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-19_005440]]
−
* [[Ec-00_007360]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
+
*** Assignment: EC-NUMBER
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-27_002140]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-17_003520]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-08_002270]]
+
−
** [[pantograph]]-[[aragem]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY3O-19]], ubiquinol-6 biosynthesis from 4-hydroxybenzoate (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-19 PWY3O-19]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY-7235]], superpathway of ubiquinol-6 biosynthesis (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7235 PWY-7235]
+
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19649 19649]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05616 R05616]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P56459 P56459]
 +
** [http://www.uniprot.org/uniprot/O26328 O26328]
 +
** [http://www.uniprot.org/uniprot/O83950 O83950]
 +
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
 +
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
 +
** [http://www.uniprot.org/uniprot/O32038 O32038]
 +
** [http://www.uniprot.org/uniprot/O67589 O67589]
 +
** [http://www.uniprot.org/uniprot/P43817 P43817]
 +
** [http://www.uniprot.org/uniprot/O51402 O51402]
 +
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
 +
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
 +
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
 +
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
 +
** [http://www.uniprot.org/uniprot/O58776 O58776]
 +
** [http://www.uniprot.org/uniprot/O84546 O84546]
 +
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
 +
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
 +
** [http://www.uniprot.org/uniprot/P47282 P47282]
 +
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
 +
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
 +
** [http://www.uniprot.org/uniprot/P36429 P36429]
 +
** [http://www.uniprot.org/uniprot/P75068 P75068]
 +
** [http://www.uniprot.org/uniprot/P73851 P73851]
 +
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
 +
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
 +
** [http://www.uniprot.org/uniprot/P04802 P04802]
 +
** [http://www.uniprot.org/uniprot/P15179 P15179]
 +
** [http://www.uniprot.org/uniprot/P21889 P21889]
 +
** [http://www.uniprot.org/uniprot/P14868 P14868]
 +
** [http://www.uniprot.org/uniprot/P15178 P15178]
 +
** [http://www.uniprot.org/uniprot/O81892 O81892]
 +
** [http://www.uniprot.org/uniprot/O74407 O74407]
 +
** [http://www.uniprot.org/uniprot/O07683 O07683]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=4-hydroxybenzoate nonaprenyltransferase}}
+
{{#set: common name=Aspartyl-tRNA synthetases}}
−
{{#set: ec number=EC-2.5.1.39}}
+
{{#set: common name=Aminoacyl-tRNA synthetase, class II (D/K/N)-like}}
−
{{#set: gene associated=Ec-18_000990|Ec-24_003910|Ec-00_007360|Ec-27_002140|Ec-17_003520|Ec-08_002270}}
+
{{#set: ec number=EC-6.1.1.12}}
−
{{#set: in pathway=PWY3O-19|PWY-7235}}
+
{{#set: gene associated=Ec-06_003810|Ec-19_005440}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: in pathway=TRNA-CHARGING-PWY}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:28, 21 March 2018

Reaction ASPARTATE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Aspartyl-tRNA synthetases
    • Aminoacyl-tRNA synthetase, class II (D/K/N)-like
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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