Difference between revisions of "RXN-16095"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-81 PWY-81] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALDEHYDROG-RXN 3-ISOPROPYLMALDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name:...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-81 PWY-81] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALDEHYDROG-RXN 3-ISOPROPYLMALDEHYDROG-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** REVERSIBLE
 
* common name:
 
* common name:
−
** toluene degradation to benzoyl-CoA (anaerobic)
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** 3-isopropylmalate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
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** toluene oxidation (anaerobic)
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** β-isopropylmalic enzyme
 +
** threo-Ds-3-isopropylmalate dehydrogenase
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[RXN-902]]
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** 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[CPD-7100]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Ec-16_001250]]
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** 1 (2R,3S)-3-isopropylmalate[c] '''+''' 1 NAD+[c] '''<=>''' 1 (2S)-2-isopropyl-3-oxosuccinate[c] '''+''' 1 H+[c] '''+''' 1 NADH[c]
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*** [[Ec-16_003560]]
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*** [[Ec-06_001380]]
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== Genes associated with this reaction  ==
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*** [[Ec-14_006530]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* Gene: [[Ec-16_002120]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN-905]]
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*** Assignment: EC-NUMBER
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** 2 associated gene(s):
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** Source: [[orthology-aragem]]
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*** [[Ec-14_006530]]
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== Pathways  ==
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*** [[Ec-19_005290]]
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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** 1 reconstruction source(s) associated:
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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== Reaction(s) not found ==
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-863 RXN-863]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-864 RXN-864]
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* Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-865 RXN-865]
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** Source: [[orthology-aragem]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-904 RXN-904]
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*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* UM-BBD-PWY : tol2
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* RHEA:
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{{#set: taxonomic range=TAX-1224}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10892 10892]
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{{#set: common name=toluene degradation to benzoyl-CoA (anaerobic)}}
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* LIGAND-RXN:
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{{#set: common name=toluene oxidation (anaerobic)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04426 R04426]
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{{#set: reaction found=2}}
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* UNIPROT:
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{{#set: total reaction=6}}
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** [http://www.uniprot.org/uniprot/P05644 P05644]
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{{#set: completion rate=33.0}}
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** [http://www.uniprot.org/uniprot/P05645 P05645]
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** [http://www.uniprot.org/uniprot/Q01987 Q01987]
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** [http://www.uniprot.org/uniprot/Q00412 Q00412]
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** [http://www.uniprot.org/uniprot/P08791 P08791]
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** [http://www.uniprot.org/uniprot/P30125 P30125]
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** [http://www.uniprot.org/uniprot/Q9PLW0 Q9PLW0]
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** [http://www.uniprot.org/uniprot/O66607 O66607]
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** [http://www.uniprot.org/uniprot/P12010 P12010]
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** [http://www.uniprot.org/uniprot/P04173 P04173]
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** [http://www.uniprot.org/uniprot/Q5SIY4 Q5SIY4]
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** [http://www.uniprot.org/uniprot/P24098 P24098]
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** [http://www.uniprot.org/uniprot/Q9JU79 Q9JU79]
 +
** [http://www.uniprot.org/uniprot/P43860 P43860]
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** [http://www.uniprot.org/uniprot/P41019 P41019]
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** [http://www.uniprot.org/uniprot/P54354 P54354]
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** [http://www.uniprot.org/uniprot/Q56268 Q56268]
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** [http://www.uniprot.org/uniprot/P29102 P29102]
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** [http://www.uniprot.org/uniprot/P37412 P37412]
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** [http://www.uniprot.org/uniprot/P23390 P23390]
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** [http://www.uniprot.org/uniprot/P29696 P29696]
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** [http://www.uniprot.org/uniprot/P41766 P41766]
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** [http://www.uniprot.org/uniprot/Q02143 Q02143]
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** [http://www.uniprot.org/uniprot/P34733 P34733]
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** [http://www.uniprot.org/uniprot/P50180 P50180]
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** [http://www.uniprot.org/uniprot/Q12591 Q12591]
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** [http://www.uniprot.org/uniprot/Q12590 Q12590]
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** [http://www.uniprot.org/uniprot/Q12592 Q12592]
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** [http://www.uniprot.org/uniprot/P07139 P07139]
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** [http://www.uniprot.org/uniprot/P41926 P41926]
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** [http://www.uniprot.org/uniprot/P48012 P48012]
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** [http://www.uniprot.org/uniprot/P87256 P87256]
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** [http://www.uniprot.org/uniprot/P87257 P87257]
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** [http://www.uniprot.org/uniprot/P73960 P73960]
 +
** [http://www.uniprot.org/uniprot/O86504 O86504]
 +
** [http://www.uniprot.org/uniprot/O85837 O85837]
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** [http://www.uniprot.org/uniprot/P18869 P18869]
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** [http://www.uniprot.org/uniprot/P34738 P34738]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=3-isopropylmalate dehydrogenase}}
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{{#set: common name=&beta;-isopropylmalic enzyme|threo-Ds-3-isopropylmalate dehydrogenase}}
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{{#set: gene associated=Ec-16_002120}}
 +
{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:29, 21 March 2018

Reaction 3-ISOPROPYLMALDEHYDROG-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • 3-isopropylmalate dehydrogenase
  • Synonym(s):
    • β-isopropylmalic enzyme
    • threo-Ds-3-isopropylmalate dehydrogenase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • LEUSYN-PWY, L-leucine biosynthesis: LEUSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6871, 3-methylbutanol biosynthesis (engineered): PWY-6871
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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