Difference between revisions of "RXN1G-72"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-phosphoglycolate phosphatase,...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-961 RXN-961] == * direction: ** LEFT-TO-RIGHT * common name: ** D-ribulose-1,5-bisphosphate cle...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-961 RXN-961] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 2-phosphoglycolate phosphatase, eukaryotic
+
** D-ribulose-1,5-bisphosphate cleaving dioxygenase
−
** phosphoglycolate phosphatase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.18 EC-3.1.3.18]
+
** [http://enzyme.expasy.org/EC/1.13.11 EC-1.13.11]
 
* Synonym(s):
 
* Synonym(s):
 +
** D-ribulose-1,5-bisphosphate oxygenase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-67]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLYCOLLATE]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[D-RIBULOSE-15-P2]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-67]][c] '''+''' 1 [[G3P]][c] '''+''' 2 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-phosphoglycolate[c] '''+''' 1 H2O[c] '''=>''' 1 glycolate[c] '''+''' 1 phosphate[c]
+
** 1 D-ribulose-1,5-bisphosphate[c] '''+''' 1 oxygen[c] '''=>''' 1 2-phosphoglycolate[c] '''+''' 1 3-phospho-D-glycerate[c] '''+''' 2 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-12_008080]]
 
−
** ESILICULOSUS_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[Ec-28_001790]]
 
−
** ESILICULOSUS_GENOME
 
−
***GO-TERM
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
 
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
 
** '''6''' reactions found over '''9''' reactions in the full pathway
 
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[gap-filling]]
−
** Source: [[annotation-esiliculosus_genome]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14369 14369]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01334 R01334]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03140 R03140]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P40852 P40852]
+
−
** [http://www.uniprot.org/uniprot/P40853 P40853]
+
−
** [http://www.uniprot.org/uniprot/P32662 P32662]
+
−
** [http://www.uniprot.org/uniprot/P73525 P73525]
+
−
** [http://www.uniprot.org/uniprot/O33512 O33512]
+
−
** [http://www.uniprot.org/uniprot/Q9S586 Q9S586]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=2-phosphoglycolate phosphatase, eukaryotic}}
+
{{#set: common name=D-ribulose-1,5-bisphosphate cleaving dioxygenase}}
−
{{#set: common name=phosphoglycolate phosphatase}}
+
{{#set: ec number=EC-1.13.11}}
−
{{#set: ec number=EC-3.1.3.18}}
+
{{#set: common name=D-ribulose-1,5-bisphosphate oxygenase}}
−
{{#set: gene associated=Ec-12_008080|Ec-28_001790}}
+
 
{{#set: in pathway=PWY-181}}
 
{{#set: in pathway=PWY-181}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}

Revision as of 13:29, 21 March 2018

Reaction RXN-961

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • D-ribulose-1,5-bisphosphate cleaving dioxygenase
  • ec number:
  • Synonym(s):
    • D-ribulose-1,5-bisphosphate oxygenase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-ribulose-1,5-bisphosphate[c] + 1 oxygen[c] => 1 2-phosphoglycolate[c] + 1 3-phospho-D-glycerate[c] + 2 H+[c]

Genes associated with this reaction

Pathways

  • PWY-181, photorespiration: PWY-181
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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