Difference between revisions of "RXN-12789"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7654 PWY-7654] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-7088 TAX-70...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNKIN-RXN PNKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyridoxamine kinase * ec nu...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7654 PWY-7654] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNKIN-RXN PNKIN-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-7088 TAX-7088]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** (8E,10E)-dodeca-8,10-dienol biosynthesis
+
** Pyridoxamine kinase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.1.35 EC-2.7.1.35]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''5''' reactions found over '''11''' reactions in the full pathway
+
* With identifiers:
−
* [[RXN-12507]]
+
** 1 [[PYRIDOXINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PYRIDOXINE-5P]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[Ec-14_006530]]
+
** 1 pyridoxine[c] '''+''' 1 ATP[c] '''=>''' 1 pyridoxine 5'-phosphate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
−
** 2 reconstruction source(s) associated:
+
 
−
*** [[annotation-esiliculosus_genome]]
+
== Genes associated with this reaction  ==
−
*** [[orthology-aragem]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[RXN-14268]]
+
* Gene: [[Ec-02_001230]]
−
** 1 associated gene(s):
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[Ec-26_003940]]
+
*** Assignment: EC-NUMBER
−
** 1 reconstruction source(s) associated:
+
** Source: [[orthology-aragem]]
−
*** [[orthology-aragem]]
+
== Pathways  ==
−
* [[RXN-14271]]
+
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
−
** 1 associated gene(s):
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
*** [[Ec-14_006530]]
+
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
−
** 2 reconstruction source(s) associated:
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
*** [[annotation-esiliculosus_genome]]
+
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
−
*** [[orthology-aragem]]
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[RXN-14272]]
+
== Reconstruction information  ==
−
** 4 associated gene(s):
+
* Category: [[orthology]]
−
*** [[Ec-16_001250]]
+
** Source: [[orthology-aragem]]
−
*** [[Ec-16_003560]]
+
*** Tool: [[pantograph]]
−
*** [[Ec-14_006530]]
+
* Category: [[annotation]]
−
*** [[Ec-06_001380]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** 1 reconstruction source(s) associated:
+
*** Tool: [[pathwaytools]]
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[RXN-14273]]
+
−
** 4 associated gene(s):
+
−
*** [[Ec-14_006530]]
+
−
*** [[Ec-06_001380]]
+
−
*** [[Ec-16_001250]]
+
−
*** [[Ec-16_003560]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.155-RXN 2.3.1.155-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14131 RXN-14131]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16540 RXN-16540]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16541 RXN-16541]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16542 RXN-16542]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16543 RXN-16543]
+
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-7088}}
+
* RHEA:
−
{{#set: common name=(8E,10E)-dodeca-8,10-dienol biosynthesis}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25108 25108]
−
{{#set: reaction found=5}}
+
* LIGAND-RXN:
−
{{#set: total reaction=11}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01909 R01909]
−
{{#set: completion rate=45.0}}
+
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Pyridoxamine kinase}}
 +
{{#set: ec number=EC-2.7.1.35}}
 +
{{#set: gene associated=Ec-02_001230}}
 +
{{#set: in pathway=PWY-7204|PWY-7282|PLPSAL-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:30, 21 March 2018

Reaction PNKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pyridoxamine kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 pyridoxine[c] + 1 ATP[c] => 1 pyridoxine 5'-phosphate[c] + 1 ADP[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants): PWY-7204
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 5 reactions found over 9 reactions in the full pathway
  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I: PLPSAL-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-12789&oldid=19152"