Difference between revisions of "PWY-5743"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.41-RXN 2.5.1.41-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Prenyltransferase/squ...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.61-RXN 4.2.1.61-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.41-RXN 2.5.1.41-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.61-RXN 4.2.1.61-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** Prenyltransferase/squalene oxidase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.41 EC-2.5.1.41]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
 +
** D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
 +
** β-hydroxypalmitoyl-acyl carrier protein dehydrase
 +
** β-hydroxypalmitoyl thioester dehydratase
 +
** β-hydroxypalmityl-ACP dehydrase
 +
** (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
 +
** (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[SN-GLYCEROL-1-PHOSPHATE]][c] '''=>''' 1 [[SN-GERANYLGERANYLGLYCERYL-1-PHOSPHATE]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[R-3-Hydroxypalmitoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[2-Hexadecenoyl-ACPs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 geranylgeranyl diphosphate[c] '''+''' 1 sn-glycerol 1-phosphate[c] '''=>''' 1 3-(O-geranylgeranyl)-sn-glycerol 1-phosphate[c] '''+''' 1 diphosphate[c]
+
** 1 a (3R)-3-hydroxypalmitoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans hexadecenoyl-[acp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-07_006170]]
 
−
** ESILICULOSUS_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6349]], CDP-archaeol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6349 PWY-6349]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''28''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''20''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[gap-filling]]
−
** Source: [[annotation-esiliculosus_genome]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23404 23404]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04158 R04158]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04462 R04462]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P49327 P49327]
 +
** [http://www.uniprot.org/uniprot/P07149 P07149]
 +
** [http://www.uniprot.org/uniprot/P12276 P12276]
 +
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Prenyltransferase/squalene oxidase}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: ec number=EC-2.5.1.41}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: gene associated=Ec-07_006170}}
+
{{#set: ec number=EC-4.2.1.59}}
−
{{#set: in pathway=PWY-6349}}
+
{{#set: common name=D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase|β-hydroxypalmitoyl-acyl carrier protein dehydrase|β-hydroxypalmitoyl thioester dehydratase|β-hydroxypalmityl-ACP dehydrase|(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase|(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: in pathway=PWY-5971|PWY-5994}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
 +
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}

Revision as of 13:33, 21 March 2018

Reaction 4.2.1.61-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):
    • D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
    • β-hydroxypalmitoyl-acyl carrier protein dehydrase
    • β-hydroxypalmitoyl thioester dehydratase
    • β-hydroxypalmityl-ACP dehydrase
    • (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
    • (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 28 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 20 reactions found over 31 reactions in the full pathway

Reconstruction information

External links



  • "D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase" cannot be used as a page name in this wiki.
  • "(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase" cannot be used as a page name in this wiki.
  • "(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)" cannot be used as a page name in this wiki.



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