Difference between revisions of "RXN1G-240"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NAD-KIN-RXN NAD-KIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** NAD+ kinase ** Inorgani...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] == * direction: ** REVERSIBLE * common name: ** glycine dehydrogenase (decarboxy...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NAD-KIN-RXN NAD-KIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** NAD+ kinase
+
** glycine dehydrogenase (decarboxylating)
−
** Inorganic polyphosphate/ATP-NAD kinase
+
** Glycine dehydrogenase (decarboxylating)
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.23 EC-2.7.1.23]
+
** [http://enzyme.expasy.org/EC/1.4.4.2 EC-1.4.4.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 NADP+[c]
+
** 1 H+[c] '''+''' 1 glycine[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''<=>''' 1 CO2[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-18_003910]]
+
* Gene: [[Ec-07_004110]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: GO-TERM
−
* [[Ec-22_000250]]
+
* Gene: [[Ec-23_004150]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: EC-NUMBER
−
* [[Ec-08_006010]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5083]], NAD/NADH phosphorylation and dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083]
+
* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-SYN2-PWY GLYCINE-SYN2-PWY]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[NADPHOS-DEPHOS-PWY]], NAD phosphorylation and dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=NADPHOS-DEPHOS-PWY NADPHOS-DEPHOS-PWY]
+
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[NADPHOS-DEPHOS-PWY-1]], NAD phosphorylation and transhydrogenation: [http://metacyc.org/META/NEW-IMAGE?object=NADPHOS-DEPHOS-PWY-1 NADPHOS-DEPHOS-PWY-1]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7269]], NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7269 PWY-7269]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7268 PWY-7268]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18629 18629]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00104 R00104]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: common name=NAD+ kinase}}
+
** [http://www.uniprot.org/uniprot/P26969 P26969]
−
{{#set: common name=Inorganic polyphosphate/ATP-NAD kinase}}
+
** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
−
{{#set: ec number=EC-2.7.1.23}}
+
** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
−
{{#set: gene associated=Ec-18_003910|Ec-22_000250|Ec-08_006010}}
+
** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
−
{{#set: in pathway=PWY-5083|NADPHOS-DEPHOS-PWY|NADPHOS-DEPHOS-PWY-1|PWY-7269|PWY-7268}}
+
** [http://www.uniprot.org/uniprot/P23378 P23378]
 +
** [http://www.uniprot.org/uniprot/P33195 P33195]
 +
** [http://www.uniprot.org/uniprot/O80988 O80988]
 +
** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
 +
** [http://www.uniprot.org/uniprot/O32915 O32915]
 +
** [http://www.uniprot.org/uniprot/O22575 O22575]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=glycine dehydrogenase (decarboxylating)}}
 +
{{#set: common name=Glycine dehydrogenase (decarboxylating)}}
 +
{{#set: ec number=EC-1.4.4.2}}
 +
{{#set: gene associated=Ec-07_004110|Ec-23_004150}}
 +
{{#set: in pathway=GLYCINE-SYN2-PWY|GLYCLEAV-PWY}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:34, 21 March 2018

Reaction GCVP-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • glycine dehydrogenase (decarboxylating)
    • Glycine dehydrogenase (decarboxylating)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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