Difference between revisions of "CPD-14281"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCMP-DEAMINASE-RXN DCMP-DEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCMP-DEAMINASE-RXN DCMP-DEAMINASE-RXN] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** LEFT-TO-RIGHT
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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* ec number:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://enzyme.expasy.org/EC/3.5.4.12 EC-3.5.4.12]
* common name:
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** glutaryl-CoA degradation
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* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) found ==
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== Reaction Formula ==
'''3''' reactions found over '''5''' reactions in the full pathway
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* With identifiers:
* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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** 1 [[DCMP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DUMP]][c]
** 3 associated gene(s):
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* With common name(s):
*** [[Ec-26_003940]]
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** 1 dCMP[c] '''+''' 1 H2O[c] '''+''' 1 H+[c] '''=>''' 1 ammonium[c] '''+''' 1 dUMP[c]
*** [[Ec-24_000870]]
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*** [[Ec-22_002850]]
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== Genes associated with this reaction  ==
** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-12_003010]]
*** [[orthology-aragem]]
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** Source: [[orthology-aragem]]
* [[RXN-11662]]
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== Pathways  ==
** 2 associated gene(s):
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
*** [[Ec-19_005290]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
*** [[Ec-14_006530]]
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== Reconstruction information  ==
** 2 reconstruction source(s) associated:
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* Category: [[orthology]]
*** [[annotation-esiliculosus_genome]]
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** Source: [[orthology-aragem]]
*** [[orthology-aragem]]
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*** Tool: [[pantograph]]
* [[RXN-11667]]
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** 2 associated gene(s):
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*** [[Ec-17_000320]]
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*** [[Ec-14_006530]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUTACONYL-COA-DECARBOXYLASE-RXN GLUTACONYL-COA-DECARBOXYLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUTARYL-COA-DEHYDROG-RXN GLUTARYL-COA-DEHYDROG-RXN]
+
 
== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-33208}}
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* RHEA:
{{#set: taxonomic range=TAX-4751}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22924 22924]
{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
{{#set: common name=glutaryl-CoA degradation}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01663 R01663]
{{#set: reaction found=3}}
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* UNIPROT:
{{#set: total reaction=5}}
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** [http://www.uniprot.org/uniprot/P32321 P32321]
{{#set: completion rate=60.0}}
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** [http://www.uniprot.org/uniprot/P00814 P00814]
 +
** [http://www.uniprot.org/uniprot/P16006 P16006]
 +
** [http://www.uniprot.org/uniprot/P06773 P06773]
 +
** [http://www.uniprot.org/uniprot/O74069 O74069]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-3.5.4.12}}
 +
{{#set: gene associated=Ec-12_003010}}
 +
{{#set: in pathway=PWY-7210}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 13:37, 21 March 2018

Reaction DCMP-DEAMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dCMP[c] + 1 H2O[c] + 1 H+[c] => 1 ammonium[c] + 1 dUMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links