Difference between revisions of "RXN-1744"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] == * direction: ** LEFT-TO-RIGHT * common name: ** Phytoene synthase; chlo...")
(Created page with "Category:Gene == Gene Ec-20_001030 == * left end position: ** 1005929 * transcription direction: ** POSITIVE * right end position: ** 1007964 * centisome position: ** 19.5...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] ==
+
== Gene Ec-20_001030 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 1005929
−
* common name:
+
* transcription direction:
−
** Phytoene synthase; chloroplast precursor
+
** POSITIVE
 +
* right end position:
 +
** 1007964
 +
* centisome position:
 +
** 19.508278   
 
* Synonym(s):
 
* Synonym(s):
−
** prephytoene-diphosphate synthase
+
** Esi_0195_0044
−
** PSase
+
** Esi0195_0044
−
** geranylgeranyl-diphosphate geranylgeranyltransferase
+
** NDA
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[NADH-DEHYDROG-A-RXN]]
−
** 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c]
+
−
* With common name(s):
+
−
** 1 prephytoene diphosphate[c] '''=>''' 1 15-cis-phytoene[c] '''+''' 1 diphosphate[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Ec-04_002810]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
== Pathways  ==
+
−
* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-5942]], trans-lycopene biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5942 PWY-5942]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
+
−
** '''4''' reactions found over '''8''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY-6692]]
 +
* [[PWY-3781]]
 +
* [[PWY-5083]]
 +
* [[PWY0-1335]]
 +
* [[PWY0-1334]]
 +
* [[PWY-4302]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: left end position=1005929}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=1007964}}
−
{{#set: common name=Phytoene synthase; chloroplast precursor}}
+
{{#set: centisome position=19.508278    }}
−
{{#set: common name=prephytoene-diphosphate synthase|PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
+
{{#set: common name=Esi_0195_0044|Esi0195_0044|NDA}}
−
{{#set: gene associated=Ec-04_002810}}
+
{{#set: reaction associated=NADH-DEHYDROG-A-RXN}}
−
{{#set: in pathway=PWY-6287|PWY-5942|PWY-6475}}
+
{{#set: pathway associated=PWY-6692|PWY-3781|PWY-5083|PWY0-1335|PWY0-1334|PWY-4302}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 14:42, 21 March 2018

Gene Ec-20_001030

  • left end position:
    • 1005929
  • transcription direction:
    • POSITIVE
  • right end position:
    • 1007964
  • centisome position:
    • 19.508278
  • Synonym(s):
    • Esi_0195_0044
    • Esi0195_0044
    • NDA

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-1744&oldid=20898"