Difference between revisions of "Short-RNA-Fragments"

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(Created page with "Category:Gene == Gene Ec-03_003270 == * left end position: ** 3771444 * transcription direction: ** POSITIVE * right end position: ** 3776829 * centisome position: ** 57.7...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15124 RXN-15124] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-03_003270 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15124 RXN-15124] ==
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* left end position:
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* direction:
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** 3771444
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** LEFT-TO-RIGHT
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* transcription direction:
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** POSITIVE
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* right end position:
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** 3776829
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* centisome position:
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** 57.767498   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0298_0018
 
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** Esi0298_0018
 
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** AAT
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[3-SULFINOALANINE-AMINOTRANSFERASE-RXN]]
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* With identifiers:
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** [[pantograph]]-[[aragem]]
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** 1 [[2-AMINOACRYLATE]][c] '''=>''' 1 [[CPD-16015]][c]
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* [[ASPAMINOTRANS-RXN]]
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* With common name(s):
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** esiliculosus_genome
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** 1 2-aminoprop-2-enoate[c] '''=>''' 1 2-iminopropanoate[c]
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***ec-number
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** [[pantograph]]-[[aragem]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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** [[pantograph]]-[[aragem]]
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* [[PWY0-1535]], D-serine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1535 PWY0-1535]
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* [[CYSTEINE-AMINOTRANSFERASE-RXN]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** [[pantograph]]-[[aragem]]
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* [[TRYPDEG-PWY]], L-tryptophan degradation II (via pyruvate): [http://metacyc.org/META/NEW-IMAGE?object=TRYPDEG-PWY TRYPDEG-PWY]
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* [[PHEAMINOTRANS-RXN]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** [[pantograph]]-[[aragem]]
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* [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661]
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* [[RXN-10814]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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** esiliculosus_genome
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* [[SERDEG-PWY]], L-serine degradation: [http://metacyc.org/META/NEW-IMAGE?object=SERDEG-PWY SERDEG-PWY]
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***ec-number
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[RXN-11737]]
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* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
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** esiliculosus_genome
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** '''8''' reactions found over '''24''' reactions in the full pathway
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***ec-number
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* [[LCYSDEG-PWY]], L-cysteine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=LCYSDEG-PWY LCYSDEG-PWY]
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** [[pantograph]]-[[aragem]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[RXN-13697]]
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== Reconstruction information  ==
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** esiliculosus_genome
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* Category: [[annotation]]
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***ec-number
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** Source: [[annotation-esiliculosus_genome]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-7432]]
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* [[ASPARAGINE-DEG1-PWY-1]]
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* [[PHESYN]]
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* [[PWY-5079]]
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* [[CYSTEINE-DEG-PWY]]
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* [[PWY-6318]]
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* [[PWY-7383]]
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* [[ASPARTATE-DEG1-PWY]]
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* [[PWY-6643]]
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* [[PWY-6642]]
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* [[PWY-6638]]
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* [[ASPARTATESYN-PWY]]
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* [[PWY-5913]]
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* [[PWY-7117]]
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* [[GLUTDEG-PWY]]
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* [[PWY-7115]]
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* [[PWY-5329]]
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* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
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* [[PWY0-1534]]
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* [[ANAPHENOXI-PWY]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=3771444}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: in pathway=PWY0-1535|TRYPDEG-PWY|PWY-3661|SERDEG-PWY|PWY-5497|LCYSDEG-PWY}}
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{{#set: right end position=3776829}}
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{{#set: reconstruction category=annotation}}
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{{#set: centisome position=57.767498    }}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: common name=Esi_0298_0018|Esi0298_0018|AAT}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reaction associated=3-SULFINOALANINE-AMINOTRANSFERASE-RXN|ASPAMINOTRANS-RXN|CYSTEINE-AMINOTRANSFERASE-RXN|PHEAMINOTRANS-RXN|RXN-10814|RXN-11737|RXN-13697}}
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{{#set: pathway associated=PWY-7432|ASPARAGINE-DEG1-PWY-1|PHESYN|PWY-5079|CYSTEINE-DEG-PWY|PWY-6318|PWY-7383|ASPARTATE-DEG1-PWY|PWY-6643|PWY-6642|PWY-6638|ASPARTATESYN-PWY|PWY-5913|PWY-7117|GLUTDEG-PWY|PWY-7115|PWY-5329|MALATE-ASPARTATE-SHUTTLE-PWY|PWY0-1534|ANAPHENOXI-PWY}}
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Revision as of 14:44, 21 March 2018

Reaction RXN-15124

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-aminoprop-2-enoate[c] => 1 2-iminopropanoate[c]

Genes associated with this reaction

Pathways

  • PWY0-1535, D-serine degradation: PWY0-1535
    • 2 reactions found over 3 reactions in the full pathway
  • TRYPDEG-PWY, L-tryptophan degradation II (via pyruvate): TRYPDEG-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-3661, glycine betaine degradation I: PWY-3661
    • 3 reactions found over 7 reactions in the full pathway
  • SERDEG-PWY, L-serine degradation: SERDEG-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 8 reactions found over 24 reactions in the full pathway
  • LCYSDEG-PWY, L-cysteine degradation II: LCYSDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Short-RNA-Fragments&oldid=21216"