Difference between revisions of "TRNA-fragment"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.3.12-RXN 4.2.3.12-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 6-pyruvoyl tetrahydro...")
(Created page with "Category:Gene == Gene Ec-22_000060 == * left end position: ** 64371 * transcription direction: ** NEGATIVE * right end position: ** 71678 * centisome position: ** 1.425445...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.3.12-RXN 4.2.3.12-RXN] ==
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== Gene Ec-22_000060 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 64371
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* common name:
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* transcription direction:
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** 6-pyruvoyl tetrahydropterin synthase/QueD family protein
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/4.2.3.12 EC-4.2.3.12]
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** 71678
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* centisome position:
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** 1.4254457   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0437_0012
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** Esi0437_0012
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.3.7.3-RXN]]
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** 1 [[DIHYDRONEOPTERIN-P3]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[P3I]][c] '''+''' 1 [[6-PYRUVOYL-5678-TETRAHYDROPTERIN]][c]
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* With common name(s):
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** 1 7,8-dihydroneopterin 3'-triphosphate[c] '''=>''' 1 H+[c] '''+''' 1 PPPi[c] '''+''' 1 6-pyruvoyl tetrahydropterin[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-10_002190]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-27_003470]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-5664]], tetrahydrobiopterin biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5664 PWY-5664]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5663]], tetrahydrobiopterin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5663 PWY-5663]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7442]], drosopterin and aurodrosopterin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7442 PWY-7442]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6983]], tetrahydrobiopterin biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6983 PWY-6983]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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* Reaction: [[1.3.7.4-RXN]]
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** Source: [[orthology-aragem]]
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== Pathways associated ==
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* [[PWY-7170]]
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* [[PWY-5915]]
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* [[PWY-7579]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=64371}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22048 22048]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=71678}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04286 R04286]
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{{#set: centisome position=1.4254457    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Esi_0437_0012|Esi0437_0012}}
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{{#set: common name=6-pyruvoyl tetrahydropterin synthase/QueD family protein}}
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{{#set: reaction associated=1.3.7.3-RXN|1.3.7.4-RXN}}
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{{#set: ec number=EC-4.2.3.12}}
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{{#set: pathway associated=PWY-7170|PWY-5915|PWY-7579}}
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{{#set: gene associated=Ec-10_002190|Ec-27_003470}}
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{{#set: in pathway=PWY-5664|PWY-5663|PWY-7442|PWY-6983}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 13:46, 21 March 2018

Gene Ec-22_000060

  • left end position:
    • 64371
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 71678
  • centisome position:
    • 1.4254457
  • Synonym(s):
    • Esi_0437_0012
    • Esi0437_0012

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=TRNA-fragment&oldid=21476"