Difference between revisions of "Ec-19 000870"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PFRUCTPHOS-RXN 6PFRUCTPHOS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 6-phosphofructo...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11667 RXN-11667] == * direction: ** REVERSIBLE * common name: ** (S)-3-hydroxybutanoyl-CoA dehy...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PFRUCTPHOS-RXN 6PFRUCTPHOS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11667 RXN-11667] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** 6-phosphofructokinase
+
** (S)-3-hydroxybutanoyl-CoA dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.11 EC-2.7.1.11]
+
** [http://enzyme.expasy.org/EC/4.2.1.150 EC-4.2.1.150]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[FRUCTOSE-6P]][c] '''=>''' 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[S-3-HYDROXYBUTANOYL-COA]][c] '''<=>''' 1 [[CROTONYL-COA]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''=>''' 1 fructose 1,6-bisphosphate[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
+
** 1 (S)-3-hydroxybutanoyl-CoA[c] '''<=>''' 1 crotonyl-CoA[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-12_002540]]
+
* Gene: [[Ec-17_000320]]
−
** ESILICULOSUS_GENOME
+
** Source: [[orthology-aragem]]
−
***GO-TERM
+
* Gene: [[Ec-14_006530]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[orthology-aragem]]
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-22_000070]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
** [[pantograph]]-[[aragem]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-14_003880]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
+
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
−
** '''8''' reactions found over '''10''' reactions in the full pathway
+
** '''4''' reactions found over '''11''' reactions in the full pathway
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
+
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
−
** '''12''' reactions found over '''12''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
+
* [[PWY-5177]], glutaryl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177]
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
+
* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''8''' reactions in the full pathway
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
+
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6883 PWY-6883]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
+
* [[P3-PWY]], gallate degradation III (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P3-PWY P3-PWY]
−
** '''11''' reactions found over '''11''' reactions in the full pathway
+
** '''1''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
 +
** '''4''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
 +
** '''6''' reactions found over '''16''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16109 16109]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26558 26558]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00756 R00756]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03026 R03026]
−
* UNIPROT:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/Q7M3F7 Q7M3F7]
+
{{#set: common name=(S)-3-hydroxybutanoyl-CoA dehydrogenase}}
−
** [http://www.uniprot.org/uniprot/Q7M4J2 Q7M4J2]
+
{{#set: ec number=EC-4.2.1.150}}
−
** [http://www.uniprot.org/uniprot/P12382 P12382]
+
{{#set: gene associated=Ec-17_000320|Ec-14_006530}}
−
** [http://www.uniprot.org/uniprot/Q27665 Q27665]
+
{{#set: in pathway=P162-PWY|CENTFERM-PWY|PWY-5177|PWY-6583|PWY-6883|P3-PWY|PWY-7401|PWY-6863|PWY-5789}}
−
** [http://www.uniprot.org/uniprot/P52034 P52034]
+
−
** [http://www.uniprot.org/uniprot/Q7M4K9 Q7M4K9]
+
−
** [http://www.uniprot.org/uniprot/P43863 P43863]
+
−
** [http://www.uniprot.org/uniprot/P20275 P20275]
+
−
** [http://www.uniprot.org/uniprot/P47457 P47457]
+
−
** [http://www.uniprot.org/uniprot/Q01813 Q01813]
+
−
** [http://www.uniprot.org/uniprot/Q07636 Q07636]
+
−
** [http://www.uniprot.org/uniprot/P16861 P16861]
+
−
** [http://www.uniprot.org/uniprot/P16862 P16862]
+
−
** [http://www.uniprot.org/uniprot/P00512 P00512]
+
−
** [http://www.uniprot.org/uniprot/P0A796 P0A796]
+
−
** [http://www.uniprot.org/uniprot/P06999 P06999]
+
−
** [http://www.uniprot.org/uniprot/P08237 P08237]
+
−
** [http://www.uniprot.org/uniprot/P00511 P00511]
+
−
** [http://www.uniprot.org/uniprot/P70927 P70927]
+
−
** [http://www.uniprot.org/uniprot/Q7M3F5 Q7M3F5]
+
−
** [http://www.uniprot.org/uniprot/Q9TWY0 Q9TWY0]
+
−
** [http://www.uniprot.org/uniprot/P30835 P30835]
+
−
** [http://www.uniprot.org/uniprot/Q03215 Q03215]
+
−
** [http://www.uniprot.org/uniprot/Q03216 Q03216]
+
−
** [http://www.uniprot.org/uniprot/P80019 P80019]
+
−
** [http://www.uniprot.org/uniprot/Q59214 Q59214]
+
−
** [http://www.uniprot.org/uniprot/Q27705 Q27705]
+
−
** [http://www.uniprot.org/uniprot/P75476 P75476]
+
−
** [http://www.uniprot.org/uniprot/P72830 P72830]
+
−
** [http://www.uniprot.org/uniprot/Q55988 Q55988]
+
−
** [http://www.uniprot.org/uniprot/Q49084 Q49084]
+
−
** [http://www.uniprot.org/uniprot/O08333 O08333]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=6-phosphofructokinase}}
+
−
{{#set: ec number=EC-2.7.1.11}}
+
−
{{#set: gene associated=Ec-12_002540|Ec-22_000070|Ec-14_003880}}
+
−
{{#set: in pathway=PWY-1042|GLYCOLYSIS|PWY-7385|PWY-1861|ANAGLYCOLYSIS-PWY|PWY-5484}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:50, 21 March 2018

Reaction RXN-11667

  • direction:
    • REVERSIBLE
  • common name:
    • (S)-3-hydroxybutanoyl-CoA dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate): P162-PWY
    • 4 reactions found over 11 reactions in the full pathway
  • CENTFERM-PWY, pyruvate fermentation to butanoate: CENTFERM-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-5177, glutaryl-CoA degradation: PWY-5177
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6583, pyruvate fermentation to butanol I: PWY-6583
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-6883, pyruvate fermentation to butanol II (engineered): PWY-6883
    • 3 reactions found over 6 reactions in the full pathway
  • P3-PWY, gallate degradation III (anaerobic): P3-PWY
    • 1 reactions found over 11 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate): PWY-7401
    • 4 reactions found over 16 reactions in the full pathway
  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle: PWY-5789
    • 6 reactions found over 16 reactions in the full pathway

Reconstruction information

External links





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