Difference between revisions of "CPD1F-120"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=L-ASPARTATE-OXID-RXN L-ASPARTATE-OXID-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Succi...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULP3EPIM-RXN RIBULP3EPIM-RXN] == * direction: ** REVERSIBLE * common name: ** Ribulose-phosphate...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=L-ASPARTATE-OXID-RXN L-ASPARTATE-OXID-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULP3EPIM-RXN RIBULP3EPIM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
+
** Ribulose-phosphate 3-epimerase-like
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.4.3.16 EC-1.4.3.16]
+
** [http://enzyme.expasy.org/EC/5.1.3.1 EC-5.1.3.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-ASPARTATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[IMINOASPARTATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
** 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[XYLULOSE-5-PHOSPHATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-aspartate[c] '''+''' 1 oxygen[c] '''=>''' 1 2-iminosuccinate[c] '''+''' 1 H+[c] '''+''' 1 hydrogen peroxide[c]
+
** 1 D-ribulose 5-phosphate[c] '''<=>''' 1 D-xylulose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-05_003640]]
+
* Gene: [[Ec-07_002390]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-27_003930]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5316]], nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5316 PWY-5316]
+
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
−
** '''3''' reactions found over '''9''' reactions in the full pathway
+
** '''12''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-7342]], superpathway of nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7342 PWY-7342]
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
−
** '''4''' reactions found over '''13''' reactions in the full pathway
+
** '''13''' reactions found over '''13''' reactions in the full pathway
−
* [[PYRIDNUCSYN-PWY]], NAD biosynthesis I (from aspartate): [http://metacyc.org/META/NEW-IMAGE?object=PYRIDNUCSYN-PWY PYRIDNUCSYN-PWY]
+
* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 +
** '''13''' reactions found over '''18''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
Line 33: Line 53:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25876 25876]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13677 13677]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00481 R00481]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01529 R01529]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00357 R00357]
+
* UNIPROT:
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/P40117 P40117]
−
{{#set: common name=Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain}}
+
** [http://www.uniprot.org/uniprot/Q9CEB9 Q9CEB9]
−
{{#set: ec number=EC-1.4.3.16}}
+
** [http://www.uniprot.org/uniprot/P0AG07 P0AG07]
−
{{#set: gene associated=Ec-05_003640}}
+
** [http://www.uniprot.org/uniprot/Q9PI57 Q9PI57]
−
{{#set: in pathway=PWY-5316|PWY-7342|PYRIDNUCSYN-PWY}}
+
** [http://www.uniprot.org/uniprot/Q9JUA9 Q9JUA9]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P45455 P45455]
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
** [http://www.uniprot.org/uniprot/Q43157 Q43157]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q43843 Q43843]
 +
** [http://www.uniprot.org/uniprot/P74061 P74061]
 +
** [http://www.uniprot.org/uniprot/O23782 O23782]
 +
** [http://www.uniprot.org/uniprot/P51012 P51012]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Ribulose-phosphate 3-epimerase-like}}
 +
{{#set: ec number=EC-5.1.3.1}}
 +
{{#set: gene associated=Ec-07_002390|Ec-27_003930}}
 +
{{#set: in pathway=P124-PWY|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P122-PWY|P185-PWY|NONOXIPENT-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:50, 21 March 2018

Reaction RIBULP3EPIM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Ribulose-phosphate 3-epimerase-like
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial): P21-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 13 reactions found over 18 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=CPD1F-120&oldid=22143"