Difference between revisions of "Ec-09 002720"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** A...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYL-COA-OXIDASE-RXN ACYL-COA-OXIDASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYL-COA-OXIDASE-RXN ACYL-COA-OXIDASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Agmatine deiminase
+
** acyl-CoA oxidase, partial
 +
** acyl-CoA oxidase
 +
** Acyl-CoA oxidase/dehydrogenase, central domain
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.3.12 EC-3.5.3.12]
+
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[AGMATHINE]][c] '''=>''' 1 [[CPD-597]][c] '''+''' 1 [[AMMONIUM]][c]
+
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[ACYL-COA]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 agmatine[c] '''=>''' 1 N-carbamoylputrescine[c] '''+''' 1 ammonium[c]
+
** 1 oxygen[c] '''+''' 1 an acyl-CoA[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 a trans-2-enoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-02_001540]]
+
* Gene: [[Ec-22_002920]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-26_004320]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-08_006390]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-43]], putrescine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-43 PWY-43]
+
* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 30: Line 36:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* PIR:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18038 18038]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52121 T52121]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52120 T52120]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04418 T04418]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S64224 S64224]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40722 S40722]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA2 OXRTA2]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA1 OXRTA1]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX5 OXCKX5]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX4 OXCKX4]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX OXCKX]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKPM OXCKPM]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKP2 OXCKP2]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKAX OXCKAX]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4563 JC4563]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38095 I38095]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54942 B54942]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54942 A54942]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01416 R01416]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00388 R00388]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q15067 Q15067]
 +
** [http://www.uniprot.org/uniprot/Q00468 Q00468]
 +
** [http://www.uniprot.org/uniprot/P06598 P06598]
 +
** [http://www.uniprot.org/uniprot/P11356 P11356]
 +
** [http://www.uniprot.org/uniprot/P07872 P07872]
 +
** [http://www.uniprot.org/uniprot/P34355 P34355]
 +
** [http://www.uniprot.org/uniprot/P13711 P13711]
 +
** [http://www.uniprot.org/uniprot/O23977 O23977]
 +
** [http://www.uniprot.org/uniprot/O65201 O65201]
 +
** [http://www.uniprot.org/uniprot/O65202 O65202]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Agmatine deiminase}}
+
{{#set: common name=acyl-CoA oxidase, partial}}
−
{{#set: ec number=EC-3.5.3.12}}
+
{{#set: common name=acyl-CoA oxidase}}
−
{{#set: gene associated=Ec-02_001540}}
+
{{#set: common name=Acyl-CoA oxidase/dehydrogenase, central domain}}
−
{{#set: in pathway=PWY-43|ARGDEG-III-PWY}}
+
{{#set: ec number=EC-1.3.3.6}}
 +
{{#set: gene associated=Ec-22_002920|Ec-26_004320|Ec-08_006390}}
 +
{{#set: in pathway=PWY-7007}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:53, 21 March 2018

Reaction ACYL-COA-OXIDASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-CoA oxidase, partial
    • acyl-CoA oxidase
    • Acyl-CoA oxidase/dehydrogenase, central domain
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7007, methyl ketone biosynthesis (engineered): PWY-7007
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links






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