Difference between revisions of "METHYLENE-THF"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_CA+2 TransportSeed_CA+2] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-SYNTHASE-FERREDOXIN-RXN GLUTAMATE-SYNTHASE-FERREDOXIN-RXN] == * direction: ** LEFT-TO-RIG...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_CA+2 TransportSeed_CA+2] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-SYNTHASE-FERREDOXIN-RXN GLUTAMATE-SYNTHASE-FERREDOXIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Glutamate synthase (ferredoxin-dependent)
 +
** Aldolase-type TIM barrel
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.4.7.1 EC-1.4.7.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[CA+2]][e] '''=>''' 1.0 [[CA+2]][c]
+
** 2 [[PROTON]][c] '''+''' 1 [[GLN]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 2 [[GLT]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Ca2+[e] '''=>''' 1.0 Ca2+[c]
+
** 2 H+[c] '''+''' 1 L-glutamine[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 2 L-glutamate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-00_000720]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-26_004630]]
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-27_004970]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6964]], ammonia assimilation cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6964 PWY-6964]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-4341]], L-glutamate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4341 PWY-4341]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-import_from_medium]]
+
** Source: [[orthology-aragem]]
−
*** Comment: [[added to manage seeds from extracellular to cytosol compartment]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00021 R00021]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P23225 P23225]
 +
** [http://www.uniprot.org/uniprot/O67512 O67512]
 +
** [http://www.uniprot.org/uniprot/P96218 P96218]
 +
** [http://www.uniprot.org/uniprot/Q06434 Q06434]
 +
** [http://www.uniprot.org/uniprot/Q43081 Q43081]
 +
** [http://www.uniprot.org/uniprot/P55037 P55037]
 +
** [http://www.uniprot.org/uniprot/Q43155 Q43155]
 +
** [http://www.uniprot.org/uniprot/Q7M242 Q7M242]
 +
** [http://www.uniprot.org/uniprot/P51375 P51375]
 +
** [http://www.uniprot.org/uniprot/P55038 P55038]
 +
** [http://www.uniprot.org/uniprot/Q9SLM4 Q9SLM4]
 +
** [http://www.uniprot.org/uniprot/Q08258 Q08258]
 +
** [http://www.uniprot.org/uniprot/O49154 O49154]
 +
** [http://www.uniprot.org/uniprot/O19906 O19906]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=}}
+
{{#set: common name=Glutamate synthase (ferredoxin-dependent)}}
−
{{#set: reconstruction category=manual}}
+
{{#set: common name=Aldolase-type TIM barrel}}
−
{{#set: reconstruction source=manual-import_from_medium}}
+
{{#set: ec number=EC-1.4.7.1}}
−
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
+
{{#set: gene associated=Ec-00_000720|Ec-26_004630|Ec-27_004970}}
 +
{{#set: in pathway=PWY-6964|PWY-4341|PWY-6549}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:54, 21 March 2018

Reaction GLUTAMATE-SYNTHASE-FERREDOXIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glutamate synthase (ferredoxin-dependent)
    • Aldolase-type TIM barrel
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6964, ammonia assimilation cycle II: PWY-6964
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-4341, L-glutamate biosynthesis V: PWY-4341
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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