Difference between revisions of "Ec-01 005810"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12878 RXN-12878] == * direction: ** REVERSIBLE * common name: ** Aldolase-type TIM barrel ** Gl...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADPREDUCT-RXN ADPREDUCT-RXN] == * direction: ** REVERSIBLE * common name: ** ADP reductase ** Ribon...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12878 RXN-12878] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADPREDUCT-RXN ADPREDUCT-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** Aldolase-type TIM barrel
+
** ADP reductase
−
** Glutamate synthase (ferredoxin-dependent)
+
** Ribonucleoside-diphosphate reductase small chain
 +
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
 +
** EsV-1-128
 +
** EsV-1-180
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[GLT]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[2-KETOGLUTARATE]][c]
+
** 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[DADP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Red-Thioredoxin]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 L-glutamate[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''<=>''' 1 ammonium[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''+''' 1 2-oxoglutarate[c]
+
** 1 an oxidized thioredoxin[c] '''+''' 1 dADP[c] '''+''' 1 H2O[c] '''<=>''' 1 ADP[c] '''+''' 1 a reduced thioredoxin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-00_000720]]
+
* Gene: [[Ec-21_002920]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: GO-TERM
−
* [[Ec-27_004970]]
+
** Source: [[orthology-aragem]]
−
** ESILICULOSUS_GENOME
+
* Gene: [[Ec-11_002180]]
−
***EC-NUMBER
+
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-06_005570]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-17_003700]]
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-19_000440]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-11_002170]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-06_005120]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7220]], adenosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7220 PWY-7220]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7227]], adenosine deoxyribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7227 PWY-7227]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28034 28034]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R10086 R10086]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02017 R02017]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Aldolase-type TIM barrel}}
+
{{#set: common name=ADP reductase}}
−
{{#set: common name=Glutamate synthase (ferredoxin-dependent)}}
+
{{#set: common name=Ribonucleoside-diphosphate reductase small chain}}
−
{{#set: gene associated=Ec-00_000720|Ec-27_004970}}
+
{{#set: common name=ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
−
{{#set: in pathway=}}
+
{{#set: common name=EsV-1-128}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common name=EsV-1-180}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
{{#set: ec number=EC-1.17.4.1}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: gene associated=Ec-21_002920|Ec-11_002180|Ec-06_005570|Ec-17_003700|Ec-19_000440|Ec-11_002170|Ec-06_005120}}
 +
{{#set: in pathway=PWY-7220|PWY-7227}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:56, 21 March 2018

Reaction ADPREDUCT-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ADP reductase
    • Ribonucleoside-diphosphate reductase small chain
    • ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
    • EsV-1-128
    • EsV-1-180
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 an oxidized thioredoxin[c] + 1 dADP[c] + 1 H2O[c] <=> 1 ADP[c] + 1 a reduced thioredoxin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7220, adenosine deoxyribonucleotides de novo biosynthesis II: PWY-7220
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7227, adenosine deoxyribonucleotides de novo biosynthesis: PWY-7227
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-01_005810&oldid=22931"