Difference between revisions of "RXN-17783"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Radical SAM * ec number: ** [...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE HOMOGENTISATE] == * smiles: ** C1(C(=CC(=C(C=1)O)CC([O-])=O)O) * inchi key: ** In...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE HOMOGENTISATE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C1(C(=CC(=C(C=1)O)CC([O-])=O)O)
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* inchi key:
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** InChIKey=IGMNYECMUMZDDF-UHFFFAOYSA-M
 
* common name:
 
* common name:
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** Radical SAM
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** homogentisate
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/1.3.98.c EC-1.3.98.c]
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** 167.141   
 
* Synonym(s):
 
* Synonym(s):
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** 2,5-dihydroxyphenylacetate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[HOMOGENTISATE-12-DIOXYGENASE-RXN]]
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** 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''=>''' 2 [[MET]][c] '''+''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c]
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* [[RXN-2541]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 2 S-adenosyl-L-methionine[c] '''+''' 1 coproporphyrinogen III[c] '''=>''' 2 L-methionine[c] '''+''' 2 CO2[c] '''+''' 2 5'-deoxyadenosine[c] '''+''' 1 protoporphyrinogen IX[c]
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* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-20_000950]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-26_002590]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[aragem]]
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* [[Ec-14_004300]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-19_002210]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-26_001240]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15425 15425]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460389 5460389]
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* LIGAND-RXN:
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* HMDB : HMDB00130
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** [http://www.genome.jp/dbget-bin/www_bget?R06895 R06895]
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* LIGAND-CPD:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00544 C00544]
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{{#set: common name=Radical SAM}}
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* CHEMSPIDER:
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{{#set: ec number=EC-1.3.98.c}}
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** [http://www.chemspider.com/Chemical-Structure.4573931.html 4573931]
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{{#set: gene associated=Ec-20_000950|Ec-26_002590|Ec-14_004300|Ec-19_002210|Ec-26_001240}}
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* CHEBI:
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{{#set: in pathway=PWY-5531|HEMESYN2-PWY}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16169 16169]
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{{#set: reconstruction category=orthology|annotation}}
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* METABOLIGHTS : MTBLC16169
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: smiles=C1(C(=CC(=C(C=1)O)CC([O-])=O)O)}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: inchi key=InChIKey=IGMNYECMUMZDDF-UHFFFAOYSA-M}}
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{{#set: common name=homogentisate}}
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{{#set: molecular weight=167.141    }}
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{{#set: common name=2,5-dihydroxyphenylacetate}}
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{{#set: consumed by=HOMOGENTISATE-12-DIOXYGENASE-RXN|RXN-2541}}
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{{#set: produced by=4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN}}

Revision as of 14:56, 21 March 2018

Metabolite HOMOGENTISATE

  • smiles:
    • C1(C(=CC(=C(C=1)O)CC([O-])=O)O)
  • inchi key:
    • InChIKey=IGMNYECMUMZDDF-UHFFFAOYSA-M
  • common name:
    • homogentisate
  • molecular weight:
    • 167.141
  • Synonym(s):
    • 2,5-dihydroxyphenylacetate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C1(C(=CC(=C(C=1)O)CC([O-])=O)O)" cannot be used as a page name in this wiki.




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