Difference between revisions of "FARNESYL-PP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOLACTOSE-RXN KETOLACTOSE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Beta-galactosid...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=FARNESYL-PP FARNESYL-PP] == * smiles: ** CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C *...")
 
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOLACTOSE-RXN KETOLACTOSE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=FARNESYL-PP FARNESYL-PP] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C
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* inchi key:
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** InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-K
 
* common name:
 
* common name:
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** Beta-galactosidase, family GH2
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** (2E,6E)-farnesyl diphosphate
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** Glycoside hydrolase-type carbohydrate-binding, subgroup
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* molecular weight:
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* ec number:
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** 379.306   
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** [http://enzyme.expasy.org/EC/3.2.1.23 EC-3.2.1.23]
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* Synonym(s):
 
* Synonym(s):
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** 2-trans,6-trans-farnesyl diphosphate
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** FPP
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** trans, trans-farnesyl diphosphate
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** farnesyl-PP
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** farnesyl pyrophosphate
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** ω,E,E-farnesyl diphosphate
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** farnesyl diphosphate
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** (E,E)-farnesyl diphosphate
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** all-trans-farnesyl diphosphate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-8999]]
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** 1 [[3-KETOLACTOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-1242]][c] '''+''' 1 [[Glucopyranose]][c]
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* [[RXN-13162]]
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* With common name(s):
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* [[RXN-17573]]
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** 1 3'-ketolactose[c] '''+''' 1 H2O[c] '''=>''' 1 3-keto-β-D-galactose[c] '''+''' 1 D-glucopyranose[c]
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* [[RXN-12263]]
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* [[FARNESYLTRANSTRANSFERASE-RXN]]
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== Genes associated with this reaction  ==
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== Reaction(s) known to produce the compound ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[FPPSYN-RXN]]
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* Gene: [[Ec-12_007000]]
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== Reaction(s) of unknown directionality ==
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** Source: [[annotation-esiliculosus_genome]]
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* [[2.5.1.58-RXN]]
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*** Assignment: EC-NUMBER
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* [[RXN0-5180]]
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* Gene: [[Ec-06_001410]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[LACTOSEUTIL-PWY]], lactose degradation II: [http://metacyc.org/META/NEW-IMAGE?object=LACTOSEUTIL-PWY LACTOSEUTIL-PWY]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 13058-04-3
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33787 33787]
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* BIGG : 35006
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R04783 R04783]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15983959 15983959]
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* UNIPROT:
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* KNAPSACK : C00007268
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** [http://www.uniprot.org/uniprot/P06219 P06219]
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* HMDB : HMDB00961
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** [http://www.uniprot.org/uniprot/P11175 P11175]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P19668 P19668]
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** [http://www.genome.jp/dbget-bin/www_bget?C00448 C00448]
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** [http://www.uniprot.org/uniprot/P20043 P20043]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P16278 P16278]
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** [http://www.chemspider.com/Chemical-Structure.11633047.html 11633047]
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** [http://www.uniprot.org/uniprot/P23780 P23780]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P24131 P24131]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=175763 175763]
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** [http://www.uniprot.org/uniprot/Q02603 Q02603]
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* METABOLIGHTS : MTBLC175763
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** [http://www.uniprot.org/uniprot/Q53790 Q53790]
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{{#set: smiles=CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C}}
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** [http://www.uniprot.org/uniprot/P23989 P23989]
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{{#set: inchi key=InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-K}}
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** [http://www.uniprot.org/uniprot/P48982 P48982]
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{{#set: common name=(2E,6E)-farnesyl diphosphate}}
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** [http://www.uniprot.org/uniprot/Q9UYG5 Q9UYG5]
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{{#set: molecular weight=379.306    }}
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** [http://www.uniprot.org/uniprot/Q02604 Q02604]
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{{#set: common name=2-trans,6-trans-farnesyl diphosphate|FPP|trans, trans-farnesyl diphosphate|farnesyl-PP|farnesyl pyrophosphate|ω,E,E-farnesyl diphosphate|farnesyl diphosphate|(E,E)-farnesyl diphosphate|all-trans-farnesyl diphosphate}}
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** [http://www.uniprot.org/uniprot/P0AC73 P0AC73]
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{{#set: consumed by=RXN-8999|RXN-13162|RXN-17573|RXN-12263|FARNESYLTRANSTRANSFERASE-RXN}}
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** [http://www.uniprot.org/uniprot/O58247 O58247]
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{{#set: produced by=FPPSYN-RXN}}
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** [http://www.uniprot.org/uniprot/Q9UYH2 Q9UYH2]
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{{#set: reversible reaction associated=2.5.1.58-RXN|RXN0-5180}}
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** [http://www.uniprot.org/uniprot/P00722 P00722]
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** [http://www.uniprot.org/uniprot/P06864 P06864]
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** [http://www.uniprot.org/uniprot/Q47170 Q47170]
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** [http://www.uniprot.org/uniprot/Q59140 Q59140]
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** [http://www.uniprot.org/uniprot/P00723 P00723]
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** [http://www.uniprot.org/uniprot/P94248 P94248]
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** [http://www.uniprot.org/uniprot/O31341 O31341]
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** [http://www.uniprot.org/uniprot/P22498 P22498]
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** [http://www.uniprot.org/uniprot/Q02401 Q02401]
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** [http://www.uniprot.org/uniprot/P26257 P26257]
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** [http://www.uniprot.org/uniprot/Q59422 Q59422]
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** [http://www.uniprot.org/uniprot/P30812 P30812]
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** [http://www.uniprot.org/uniprot/Q12660 Q12660]
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** [http://www.uniprot.org/uniprot/P45582 P45582]
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** [http://www.uniprot.org/uniprot/P49676 P49676]
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** [http://www.uniprot.org/uniprot/Q9SCV3 Q9SCV3]
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** [http://www.uniprot.org/uniprot/Q9SZI5 Q9SZI5]
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** [http://www.uniprot.org/uniprot/O81100 O81100]
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** [http://www.uniprot.org/uniprot/Q42150 Q42150]
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** [http://www.uniprot.org/uniprot/P48980 P48980]
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** [http://www.uniprot.org/uniprot/P48981 P48981]
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** [http://www.uniprot.org/uniprot/O86616 O86616]
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** [http://www.uniprot.org/uniprot/P70753 P70753]
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** [http://www.uniprot.org/uniprot/P29853 P29853]
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** [http://www.uniprot.org/uniprot/P94804 P94804]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Beta-galactosidase, family GH2}}
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{{#set: common name=Glycoside hydrolase-type carbohydrate-binding, subgroup}}
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{{#set: ec number=EC-3.2.1.23}}
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{{#set: gene associated=Ec-12_007000|Ec-06_001410}}
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{{#set: in pathway=LACTOSEUTIL-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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−
{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 18:59, 21 March 2018

Metabolite FARNESYL-PP

  • smiles:
    • CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C
  • inchi key:
    • InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-K
  • common name:
    • (2E,6E)-farnesyl diphosphate
  • molecular weight:
    • 379.306
  • Synonym(s):
    • 2-trans,6-trans-farnesyl diphosphate
    • FPP
    • trans, trans-farnesyl diphosphate
    • farnesyl-PP
    • farnesyl pyrophosphate
    • ω,E,E-farnesyl diphosphate
    • farnesyl diphosphate
    • (E,E)-farnesyl diphosphate
    • all-trans-farnesyl diphosphate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 13058-04-3
  • BIGG : 35006
  • PUBCHEM:
  • KNAPSACK : C00007268
  • HMDB : HMDB00961
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC175763
"CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C" cannot be used as a page name in this wiki.




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