Difference between revisions of "PROTOPORPHYRIN IX"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] == * direction: ** REVERSIBLE * common name: ** isocitrate dehydrogenase (NADP+)...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORPHYRIN_IX PROTOPORPHYRIN_IX] == * smiles: ** C=CC1(C(C)=C2(C=C5(C(C)=C(CCC([O-])=O)C(C=...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORPHYRIN_IX PROTOPORPHYRIN_IX] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** C=CC1(C(C)=C2(C=C5(C(C)=C(CCC([O-])=O)C(C=C4(C(CCC([O-])=O)=C(C)C(=CC3(C(C=C)=C(C)C(=CC=1N2)N=3))N4))=N5)))
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* inchi key:
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** InChIKey=KSFOVUSSGSKXFI-UJJXFSCMSA-L
 
* common name:
 
* common name:
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** isocitrate dehydrogenase (NADP+)
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** protoporphyrin IX
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* molecular weight:
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** 560.651   
 
* Synonym(s):
 
* Synonym(s):
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** oxalsuccinic decarboxylase
 
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** isocitrate (NADP) dehydrogenase
 
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** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 
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** NADP-specific isocitrate dehydrogenase
 
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** NADP-linked isocitrate dehydrogenase
 
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** NADP isocitric dehydrogenase
 
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** isocitrate dehydrogenase (NADP-dependent)
 
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** NADP-dependent isocitric dehydrogenase
 
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** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 
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** NADP+-linked isocitrate dehydrogenase
 
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** IDH (ambiguous)
 
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** dual-cofactor-specific isocitrate dehydrogenase
 
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** NADP+-ICDH
 
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** NADP+-IDH
 
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** IDP
 
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** IDP1
 
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** IDP2
 
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** IDP3
 
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN1F-20]]
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** 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[PROTOPORGENOXI-RXN]]
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** 1 oxalosuccinate[c] '''+''' 1 H+[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 CO2[c]
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== Reaction(s) of unknown directionality ==
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* [[PROTOHEMEFERROCHELAT-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-11_003080]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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== Pathways  ==
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[esiliculosus_genome]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* CAS : 553-12-8
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** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
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* PUBCHEM:
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{{#set: direction=REVERSIBLE}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=3794562 3794562]
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{{#set: common name=isocitrate dehydrogenase (NADP+)}}
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* HMDB : HMDB00241
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{{#set: common name=oxalsuccinic decarboxylase|isocitrate (NADP) dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|NADP-specific isocitrate dehydrogenase|NADP-linked isocitrate dehydrogenase|NADP isocitric dehydrogenase|isocitrate dehydrogenase (NADP-dependent)|NADP-dependent isocitric dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|NADP+-linked isocitrate dehydrogenase|IDH (ambiguous)|dual-cofactor-specific isocitrate dehydrogenase|NADP+-ICDH|NADP+-IDH|IDP|IDP1|IDP2|IDP3}}
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* LIGAND-CPD:
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{{#set: gene associated=Ec-11_003080}}
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** [http://www.genome.jp/dbget-bin/www_bget?C02191 C02191]
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{{#set: in pathway=}}
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* CHEMSPIDER:
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{{#set: reconstruction category=annotation}}
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** [http://www.chemspider.com/Chemical-Structure.20171337.html 20171337]
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{{#set: reconstruction tool=pathwaytools}}
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* CHEBI:
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{{#set: reconstruction source=esiliculosus_genome}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57306 57306]
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* BIGG : 39293
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{{#set: smiles=C=CC1(C(C)=C2(C=C5(C(C)=C(CCC([O-])=O)C(C=C4(C(CCC([O-])=O)=C(C)C(=CC3(C(C=C)=C(C)C(=CC=1N2)N=3))N4))=N5)))}}
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{{#set: inchi key=InChIKey=KSFOVUSSGSKXFI-UJJXFSCMSA-L}}
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{{#set: common name=protoporphyrin IX}}
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{{#set: molecular weight=560.651    }}
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{{#set: consumed by=RXN1F-20}}
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{{#set: produced by=PROTOPORGENOXI-RXN}}
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{{#set: reversible reaction associated=PROTOHEMEFERROCHELAT-RXN}}

Latest revision as of 19:59, 21 March 2018

Metabolite PROTOPORPHYRIN_IX

  • smiles:
    • C=CC1(C(C)=C2(C=C5(C(C)=C(CCC([O-])=O)C(C=C4(C(CCC([O-])=O)=C(C)C(=CC3(C(C=C)=C(C)C(=CC=1N2)N=3))N4))=N5)))
  • inchi key:
    • InChIKey=KSFOVUSSGSKXFI-UJJXFSCMSA-L
  • common name:
    • protoporphyrin IX
  • molecular weight:
    • 560.651
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C=CC1(C(C)=C2(C=C5(C(C)=C(CCC([O-])=O)C(C=C4(C(CCC([O-])=O)=C(C)C(=CC3(C(C=C)=C(C)C(=CC=1N2)N=3))N4))=N5)))" cannot be used as a page name in this wiki.




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