Difference between revisions of "RXN-12575"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9527 RXN-9527] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-decanoyl-[acyl-carrier...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] == * direction: ** LEFT-TO-RIGHT * common name: ** all-trans retinyl-ester hyd...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9527 RXN-9527] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-oxo-decanoyl-[acyl-carrier protein] synthase
+
** all-trans retinyl-ester hydrolase
−
** Beta-ketoacyl synthase, N-terminal
+
** Phospholipase/carboxylesterase/thioesterase
−
** Thiolase-like, subgroup
+
** carboxylic ester hydrolase
−
** beta-ketoacyl synthase, partial
+
** Carboxylesterase, type B
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
+
** putative serine esterase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[Octanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''=>''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ACP]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[All-trans-Retinyl-Esters]][c] '''=>''' 1 [[CPD-13524]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 an octanoyl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''=>''' 1 a 3-oxo-decanoyl-[acp][c] '''+''' 1 CO2[c] '''+''' 1 a holo-[acyl-carrier protein][c]
+
** 1 H2O[c] '''+''' 1 an all-trans-retinyl ester[c] '''=>''' 1 all-trans-retinol[c] '''+''' 1 H+[c] '''+''' 1 a long-chain fatty acid[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-12_000640]]
+
* Gene: [[Ec-27_004830]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-27_003480]]
+
* Gene: [[Ec-19_001900]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: GO-TERM
−
* [[Ec-27_002090]]
+
* Gene: [[Ec-12_006850]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-16_002070]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-12_000650]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** ESILICULOSUS_GENOME
+
* Gene: [[Ec-25_000250]]
−
***GO-TERM
+
** Source: [[annotation-esiliculosus_genome]]
−
** [[pantograph]]-[[aragem]]
+
*** Assignment: GO-TERM
−
** [[pantograph]]-[[aragem]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
−
** '''28''' reactions found over '''31''' reactions in the full pathway
+
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-oxo-decanoyl-[acyl-carrier protein] synthase}}
+
{{#set: common name=all-trans retinyl-ester hydrolase}}
−
{{#set: common name=Beta-ketoacyl synthase, N-terminal}}
+
{{#set: common name=Phospholipase/carboxylesterase/thioesterase}}
−
{{#set: common name=Thiolase-like, subgroup}}
+
{{#set: common name=carboxylic ester hydrolase}}
−
{{#set: common name=beta-ketoacyl synthase, partial}}
+
{{#set: common name=Carboxylesterase, type B}}
−
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase}}
+
{{#set: common name=putative serine esterase}}
−
{{#set: ec number=EC-2.3.1.41}}
+
{{#set: ec number=EC-3.1.1.1}}
−
{{#set: gene associated=Ec-12_000640|Ec-27_003480|Ec-27_002090|Ec-12_000650}}
+
{{#set: gene associated=Ec-27_004830|Ec-19_001900|Ec-12_006850|Ec-16_002070|Ec-25_000250}}
−
{{#set: in pathway=PWY-5971}}
+
{{#set: in pathway=PWY-6857}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:00, 21 March 2018

Reaction RXN-12575

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • all-trans retinyl-ester hydrolase
    • Phospholipase/carboxylesterase/thioesterase
    • carboxylic ester hydrolase
    • Carboxylesterase, type B
    • putative serine esterase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6857, retinol biosynthesis: PWY-6857
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-12575&oldid=23759"