Difference between revisions of "RXN-12575"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] == * direction: ** LEFT-TO-RIGHT * common name: ** all-trans retinyl-ester hyd...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Aminotransferase, class I/classII
+
** all-trans retinyl-ester hydrolase
 +
** Phospholipase/carboxylesterase/thioesterase
 +
** carboxylic ester hydrolase
 +
** Carboxylesterase, type B
 +
** putative serine esterase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.50 EC-2.3.1.50]
+
** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PALMITYL-COA]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[All-trans-Retinyl-Esters]][c] '''=>''' 1 [[CPD-13524]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 palmitoyl-CoA[c] '''+''' 1 L-serine[c] '''+''' 1 H+[c] '''=>''' 1 coenzyme A[c] '''+''' 1 3-dehydrosphinganine[c] '''+''' 1 CO2[c]
+
** 1 H2O[c] '''+''' 1 an all-trans-retinyl ester[c] '''=>''' 1 all-trans-retinol[c] '''+''' 1 H+[c] '''+''' 1 a long-chain fatty acid[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-24_002690]]
+
* Gene: [[Ec-27_004830]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[orthology-aragem]]
+
* Gene: [[Ec-19_001900]]
−
* Gene: [[Ec-11_004190]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
 +
* Gene: [[Ec-12_006850]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-16_002070]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-25_000250]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129]
+
* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
−
** '''1''' reactions found over '''13''' reactions in the full pathway
+
** '''2''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
−
* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY]
+
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14761 14761]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P25045 P25045]
 
−
** [http://www.uniprot.org/uniprot/O15270 O15270]
 
−
** [http://www.uniprot.org/uniprot/P48241 P48241]
 
−
** [http://www.uniprot.org/uniprot/Q09925 Q09925]
 
−
** [http://www.uniprot.org/uniprot/P40970 P40970]
 
−
** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
 
−
** [http://www.uniprot.org/uniprot/Q20375 Q20375]
 
−
** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Aminotransferase, class I/classII}}
+
{{#set: common name=all-trans retinyl-ester hydrolase}}
−
{{#set: ec number=EC-2.3.1.50}}
+
{{#set: common name=Phospholipase/carboxylesterase/thioesterase}}
−
{{#set: gene associated=Ec-24_002690|Ec-11_004190}}
+
{{#set: common name=carboxylic ester hydrolase}}
−
{{#set: in pathway=PWY-5129|PWY3DJ-12|SPHINGOLIPID-SYN-PWY}}
+
{{#set: common name=Carboxylesterase, type B}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: common name=putative serine esterase}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
{{#set: ec number=EC-3.1.1.1}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: gene associated=Ec-27_004830|Ec-19_001900|Ec-12_006850|Ec-16_002070|Ec-25_000250}}
 +
{{#set: in pathway=PWY-6857}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:00, 21 March 2018

Reaction RXN-12575

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • all-trans retinyl-ester hydrolase
    • Phospholipase/carboxylesterase/thioesterase
    • carboxylic ester hydrolase
    • Carboxylesterase, type B
    • putative serine esterase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6857, retinol biosynthesis: PWY-6857
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-12575&oldid=23759"