Difference between revisions of "PWY-5913"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1124 RXN-1124] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ident...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1118 TAX-11...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1124 RXN-1124] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1118 TAX-1118]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1217 TAX-1217]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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* common name:
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** partial TCA cycle (obligate autotrophs)
 
* Synonym(s):
 
* Synonym(s):
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** TCA cycle VI (obligate autotrophs)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''10''' reactions found over '''11''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[SINAPOYL-COA]][c] '''+''' 1 [[NADPH]][c] '''<=>''' 1 [[NADP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[SINAPALDEHYDE]][c]
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* [[ACONITATEDEHYDR-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 H+[c] '''+''' 1 sinapoyl-CoA[c] '''+''' 1 NADPH[c] '''<=>''' 1 NADP+[c] '''+''' 1 coenzyme A[c] '''+''' 1 sinapaldehyde[c]
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*** [[Ec-16_001000]]
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*** [[Ec-12_000170]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* [[Ec-12_005240]]
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* [[ACONITATEHYDR-RXN]]
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** [[pantograph]]-[[aragem]]
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** 2 associated gene(s):
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* [[Ec-23_001220]]
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*** [[Ec-16_001000]]
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** [[pantograph]]-[[aragem]]
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*** [[Ec-12_000170]]
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* [[Ec-12_001350]]
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** 1 reconstruction source(s) associated:
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** [[pantograph]]-[[aragem]]
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*** [[annotation-esiliculosus_genome]]
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== Pathways  ==
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* [[ASPAMINOTRANS-RXN]]
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== Reconstruction information  ==
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** 3 associated gene(s):
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* [[orthology]]:
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*** [[Ec-03_003270]]
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** [[pantograph]]:
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*** [[Ec-01_007480]]
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*** [[aragem]]
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*** [[Ec-23_003500]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[CITSYN-RXN]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Ec-25_001360]]
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*** [[Ec-23_003460]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[GLUTDEHYD-RXN]]
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** 2 associated gene(s):
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*** [[Ec-06_008240]]
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*** [[Ec-12_008040]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[ISOCITDEH-RXN]]
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** 1 associated gene(s):
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*** [[Ec-11_003080]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Ec-10_006200]]
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*** [[Ec-02_003100]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PEPCARBOX-RXN]]
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** 1 associated gene(s):
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*** [[Ec-28_003470]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[Ec-10_000030]]
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*** [[Ec-02_001020]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14970 RXN-14970]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-1118}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02220 R02220]
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{{#set: taxonomic range=TAX-1217}}
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{{#set: direction=REVERSIBLE}}
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{{#set: taxonomic range=TAX-1224}}
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{{#set: gene associated=Ec-12_005240|Ec-23_001220|Ec-12_001350}}
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{{#set: common name=partial TCA cycle (obligate autotrophs)}}
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{{#set: in pathway=}}
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{{#set: common name=TCA cycle VI (obligate autotrophs)}}
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{{#set: reconstruction category=orthology}}
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{{#set: reaction found=10}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: total reaction=11}}
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{{#set: reconstruction source=aragem}}
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{{#set: completion rate=91.0}}

Latest revision as of 20:00, 21 March 2018

Pathway PWY-5913

  • taxonomic range:
  • common name:
    • partial TCA cycle (obligate autotrophs)
  • Synonym(s):
    • TCA cycle VI (obligate autotrophs)

Reaction(s) found

10 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-5913&oldid=23763"