Difference between revisions of "APIGNAR-RXN"

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(Created page with "Category:Gene == Gene Ec-25_001440 == * left end position: ** 1714048 * transcription direction: ** POSITIVE * right end position: ** 1717970 * centisome position: ** 38.5...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Naringenin chalcone iso...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-25_001440 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] ==
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* left end position:
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* direction:
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** 1714048
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Naringenin chalcone isomerase
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* right end position:
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* ec number:
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** 1717970
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** [http://enzyme.expasy.org/EC/5.5.1.6 EC-5.5.1.6]
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* centisome position:
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** 38.509815   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0257_0006
 
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** Esi0257_0006
 
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** QCR
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[1.10.2.2-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[APIGENIN]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
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***ec-number
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* With common name(s):
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* [[RXN-14107]]
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** 1 2',4,4',6'-tetrahydroxychalcone[c] '''=>''' 1 (2S)-naringenin[c]
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** esiliculosus_genome
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***ec-number
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== Genes associated with this reaction  ==
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* [[RXN-15816]]
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Genes have been associated with this reaction based on different elements listed below.
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** esiliculosus_genome
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* Gene: [[Ec-00_005930]]
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***ec-number
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** Source: [[orthology-aragem]]
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* [[RXN-15829]]
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* Gene: [[Ec-05_001880]]
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** esiliculosus_genome
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** Source: [[orthology-aragem]]
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***ec-number
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== Pathways  ==
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== Pathways associated ==
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* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
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* [[PWY-7082]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6692]]
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* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
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* [[PWY-3781]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7279]]
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
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** '''6''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1714048}}
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* LIGAND-RXN:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
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{{#set: right end position=1717970}}
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* UNIPROT:
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{{#set: centisome position=38.509815    }}
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** [http://www.uniprot.org/uniprot/P11650 P11650]
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{{#set: common name=Esi_0257_0006|Esi0257_0006|QCR}}
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** [http://www.uniprot.org/uniprot/P11651 P11651]
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{{#set: reaction associated=1.10.2.2-RXN|RXN-14107|RXN-15816|RXN-15829}}
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** [http://www.uniprot.org/uniprot/P41088 P41088]
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{{#set: pathway associated=PWY-7082|PWY-6692|PWY-3781|PWY-7279}}
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** [http://www.uniprot.org/uniprot/P14298 P14298]
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** [http://www.uniprot.org/uniprot/Q42925 Q42925]
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** [http://www.uniprot.org/uniprot/Q42926 Q42926]
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** [http://www.uniprot.org/uniprot/Q08704 Q08704]
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** [http://www.uniprot.org/uniprot/P28012 P28012]
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** [http://www.uniprot.org/uniprot/P41089 P41089]
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** [http://www.uniprot.org/uniprot/O81980 O81980]
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** [http://www.uniprot.org/uniprot/O22604 O22604]
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** [http://www.uniprot.org/uniprot/O22651 O22651]
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** [http://www.uniprot.org/uniprot/Q43754 Q43754]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Naringenin chalcone isomerase}}
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{{#set: ec number=EC-5.5.1.6}}
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{{#set: gene associated=Ec-00_005930|Ec-05_001880}}
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{{#set: in pathway=PWY-7397|PWY1F-FLAVSYN|PWY-6787}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-aragem}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:01, 21 March 2018

Reaction APIGNAR-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Naringenin chalcone isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2',4,4',6'-tetrahydroxychalcone[c] => 1 (2S)-naringenin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7397, naringenin biosynthesis (engineered): PWY-7397
    • 3 reactions found over 4 reactions in the full pathway
  • PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=APIGNAR-RXN&oldid=23897"