Difference between revisions of "RXN-12195"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920] == * common name: ** 6-gingerol analog biosynthesis (engineered) * Synonym(s): ==...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12195 RXN-12195] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside-triphosphatase *...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12195 RXN-12195] ==
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* direction:
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** 6-gingerol analog biosynthesis (engineered)
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** nucleoside-triphosphatase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.6.1.15 EC-3.6.1.15]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[CTP]][c] '''=>''' 1 [[CDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Ec-10_001480]]
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** 1 H2O[c] '''+''' 1 CTP[c] '''=>''' 1 CDP[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c]
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*** [[Ec-04_001280]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-aragem]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[R223-RXN]]
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* Gene: [[Ec-05_005340]]
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** 4 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-02_006430]]
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*** Assignment: GO-TERM
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*** [[Ec-12_008720]]
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* Gene: [[Ec-03_004860]]
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*** [[Ec-03_003710]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-01_001560]]
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*** Assignment: GO-TERM
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** 1 reconstruction source(s) associated:
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* Gene: [[Ec-02_005730]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN-12669]]
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*** Assignment: GO-TERM
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** 3 associated gene(s):
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* Gene: [[Ec-17_000870]]
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*** [[Ec-26_004320]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-22_002920]]
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*** Assignment: GO-TERM
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*** [[Ec-08_006390]]
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* Gene: [[Ec-18_004660]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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== Reaction(s) not found ==
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* Gene: [[Ec-28_000420]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12668 RXN-12668]
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14275 RXN-14275]
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*** Assignment: GO-TERM
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14276 RXN-14276]
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* Gene: [[Ec-03_001180]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-01_003690]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-06_005470]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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== Pathways  ==
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: common name=6-gingerol analog biosynthesis (engineered)}}
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* LIGAND-RXN:
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{{#set: reaction found=3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00569 R00569]
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{{#set: total reaction=6}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=50.0}}
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{{#set: common name=nucleoside-triphosphatase}}
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{{#set: ec number=EC-3.6.1.15}}
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{{#set: gene associated=Ec-05_005340|Ec-03_004860|Ec-02_005730|Ec-17_000870|Ec-18_004660|Ec-28_000420|Ec-03_001180|Ec-01_003690|Ec-06_005470}}
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{{#set: in pathway=PWY-7210|PWY-7198|PWY-6545|PWY-7184}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:01, 21 March 2018

Reaction RXN-12195

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nucleoside-triphosphatase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 CTP[c] => 1 CDP[c] + 1 H+[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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