Difference between revisions of "TRYPSYN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12482 CPD-12482] == * smiles: ** CN1(C(=O)NC2(=C1C(=O)NC(=O)N(C)2)) * inchi key: ** InChIKe...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPSYN-RXN TRYPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Tryptophan synthase bet...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12482 CPD-12482] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPSYN-RXN TRYPSYN-RXN] ==
−
* smiles:
+
* direction:
−
** CN1(C(=O)NC2(=C1C(=O)NC(=O)N(C)2))
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=HMLZLHKHNBLLJD-UHFFFAOYSA-N
+
 
* common name:
 
* common name:
−
** 3,7-dimethylurate
+
** Tryptophan synthase beta subunit-like PLP-dependent enzyme
−
* molecular weight:
+
** Tryptophan synthase, beta chain
−
** 196.165   
+
** Tryptophan synthase (alpha / beta chains)
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/4.2.1.20 EC-4.2.1.20]
 
* Synonym(s):
 
* Synonym(s):
−
** 3,7-dimethyluric acid
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[RXN-11519]]
+
** 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 L-serine[c] '''=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 L-tryptophan[c] '''+''' 1 H2O[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-00_008830]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-17_002680]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-24_004010]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-20_002800]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-24_002360]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-27_001950]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-06_007490]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-01_012080]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=83126 83126]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10532 10532]
−
* HMDB : HMDB01982
+
* LIGAND-RXN:
−
* LIGAND-CPD:
+
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
−
** [http://www.genome.jp/dbget-bin/www_bget?C16360 C16360]
+
* UNIPROT:
−
* CHEMSPIDER:
+
** [http://www.uniprot.org/uniprot/P11081 P11081]
−
** [http://www.chemspider.com/Chemical-Structure.74994.html 74994]
+
** [http://www.uniprot.org/uniprot/P14671 P14671]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/P13228 P13228]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=68531 68531]
+
** [http://www.uniprot.org/uniprot/P18284 P18284]
−
* METABOLIGHTS : MTBLC68531
+
** [http://www.uniprot.org/uniprot/P43759 P43759]
−
{{#set: smiles=CN1(C(=O)NC2(=C1C(=O)NC(=O)N(C)2))}}
+
** [http://www.uniprot.org/uniprot/O84172 O84172]
−
{{#set: inchi key=InChIKey=HMLZLHKHNBLLJD-UHFFFAOYSA-N}}
+
** [http://www.uniprot.org/uniprot/P11080 P11080]
−
{{#set: common name=3,7-dimethylurate}}
+
** [http://www.uniprot.org/uniprot/P16608 P16608]
−
{{#set: molecular weight=196.165    }}
+
** [http://www.uniprot.org/uniprot/P18285 P18285]
−
{{#set: common name=3,7-dimethyluric acid}}
+
** [http://www.uniprot.org/uniprot/P16706 P16706]
−
{{#set: produced by=RXN-11519}}
+
** [http://www.uniprot.org/uniprot/P12290 P12290]
 +
** [http://www.uniprot.org/uniprot/P42391 P42391]
 +
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
 +
** [http://www.uniprot.org/uniprot/P12291 P12291]
 +
** [http://www.uniprot.org/uniprot/P42389 P42389]
 +
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
 +
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
 +
** [http://www.uniprot.org/uniprot/P07600 P07600]
 +
** [http://www.uniprot.org/uniprot/P07601 P07601]
 +
** [http://www.uniprot.org/uniprot/P06561 P06561]
 +
** [http://www.uniprot.org/uniprot/P56142 P56142]
 +
** [http://www.uniprot.org/uniprot/P06562 P06562]
 +
** [http://www.uniprot.org/uniprot/O27696 O27696]
 +
** [http://www.uniprot.org/uniprot/O28672 O28672]
 +
** [http://www.uniprot.org/uniprot/O66923 O66923]
 +
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
 +
** [http://www.uniprot.org/uniprot/P43760 P43760]
 +
** [http://www.uniprot.org/uniprot/P34817 P34817]
 +
** [http://www.uniprot.org/uniprot/P34816 P34816]
 +
** [http://www.uniprot.org/uniprot/P17167 P17167]
 +
** [http://www.uniprot.org/uniprot/P17166 P17166]
 +
** [http://www.uniprot.org/uniprot/P19868 P19868]
 +
** [http://www.uniprot.org/uniprot/P19867 P19867]
 +
** [http://www.uniprot.org/uniprot/P16578 P16578]
 +
** [http://www.uniprot.org/uniprot/P43283 P43283]
 +
** [http://www.uniprot.org/uniprot/P43284 P43284]
 +
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
 +
** [http://www.uniprot.org/uniprot/P31204 P31204]
 +
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
 +
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
 +
** [http://www.uniprot.org/uniprot/P34793 P34793]
 +
** [http://www.uniprot.org/uniprot/P42390 P42390]
 +
** [http://www.uniprot.org/uniprot/P50909 P50909]
 +
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
 +
** [http://www.uniprot.org/uniprot/P51382 P51382]
 +
** [http://www.uniprot.org/uniprot/P77960 P77960]
 +
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
 +
** [http://www.uniprot.org/uniprot/O22765 O22765]
 +
** [http://www.uniprot.org/uniprot/O04225 O04225]
 +
** [http://www.uniprot.org/uniprot/P25269 P25269]
 +
** [http://www.uniprot.org/uniprot/O64991 O64991]
 +
** [http://www.uniprot.org/uniprot/O05625 O05625]
 +
** [http://www.uniprot.org/uniprot/O13831 O13831]
 +
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
 +
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
 +
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
 +
** [http://www.uniprot.org/uniprot/P00931 P00931]
 +
** [http://www.uniprot.org/uniprot/P00929 P00929]
 +
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
 +
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 +
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Tryptophan synthase beta subunit-like PLP-dependent enzyme}}
 +
{{#set: common name=Tryptophan synthase, beta chain}}
 +
{{#set: common name=Tryptophan synthase (alpha / beta chains)}}
 +
{{#set: ec number=EC-4.2.1.20}}
 +
{{#set: gene associated=Ec-00_008830|Ec-17_002680|Ec-24_004010|Ec-20_002800|Ec-24_002360|Ec-27_001950|Ec-06_007490|Ec-01_012080}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:01, 21 March 2018

Reaction TRYPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Tryptophan synthase beta subunit-like PLP-dependent enzyme
    • Tryptophan synthase, beta chain
    • Tryptophan synthase (alpha / beta chains)
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] + 1 L-serine[c] => 1 D-glyceraldehyde 3-phosphate[c] + 1 L-tryptophan[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=TRYPSYN-RXN&oldid=23953"