Difference between revisions of "LYSINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** Aspartate Amin...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Aspartate Aminotransferase
+
** Lysyl-tRNA Synthetase
−
** aspartate aminotransferase
+
** Lysyl-tRNA ligase
−
** Pyridoxal phosphate-dependent transferase, major region, subdomain 1
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
+
** [http://enzyme.expasy.org/EC/6.1.1.6 EC-6.1.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-ASPARTATE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[GLT]][c]
+
** 1 [[LYS]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[LYS-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-aspartate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 oxaloacetate[c] '''+''' 1 L-glutamate[c]
+
** 1 L-lysine[c] '''+''' 1 ATP[c] '''+''' 1 H+[c] '''+''' 1 a tRNAlys[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-lysyl-[tRNAlys][c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-23_003500]]
+
* Gene: [[Ec-19_000900]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Ec-03_003270]]
+
* Gene: [[Ec-01_005790]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[aragem]]
+
−
** [[pantograph]]-[[aragem]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-01_007480]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
+
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
−
* [[ASPARTATE-DEG1-PWY]], L-aspartate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-DEG1-PWY ASPARTATE-DEG1-PWY]
+
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
−
* [[ASPARTATESYN-PWY]], L-aspartate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATESYN-PWY ASPARTATESYN-PWY]
+
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
+
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
−
* [[GLUTDEG-PWY]], L-glutamate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEG-PWY GLUTDEG-PWY]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21824 21824]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00355 R00355]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7LZ21 Q7LZ21]
+
** [http://www.uniprot.org/uniprot/P41258 P41258]
−
** [http://www.uniprot.org/uniprot/P08906 P08906]
+
** [http://www.uniprot.org/uniprot/P46861 P46861]
−
** [http://www.uniprot.org/uniprot/P12343 P12343]
+
** [http://www.uniprot.org/uniprot/P47382 P47382]
−
** [http://www.uniprot.org/uniprot/Q06191 Q06191]
+
** [http://www.uniprot.org/uniprot/O57963 O57963]
−
** [http://www.uniprot.org/uniprot/Q02635 Q02635]
+
** [http://www.uniprot.org/uniprot/O51603 O51603]
−
** [http://www.uniprot.org/uniprot/Q60317 Q60317]
+
** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
−
** [http://www.uniprot.org/uniprot/O28151 O28151]
+
** [http://www.uniprot.org/uniprot/O83650 O83650]
−
** [http://www.uniprot.org/uniprot/O67781 O67781]
+
** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
−
** [http://www.uniprot.org/uniprot/P08907 P08907]
+
** [http://www.uniprot.org/uniprot/P43825 P43825]
−
** [http://www.uniprot.org/uniprot/P12345 P12345]
+
** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
−
** [http://www.uniprot.org/uniprot/Q9X0Y2 Q9X0Y2]
+
** [http://www.uniprot.org/uniprot/O84786 O84786]
−
** [http://www.uniprot.org/uniprot/Q9PPF7 Q9PPF7]
+
** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
−
** [http://www.uniprot.org/uniprot/Q9JVS3 Q9JVS3]
+
** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
−
** [http://www.uniprot.org/uniprot/P53001 P53001]
+
** [http://www.uniprot.org/uniprot/P56126 P56126]
−
** [http://www.uniprot.org/uniprot/P96847 P96847]
+
** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
−
** [http://www.uniprot.org/uniprot/Q9K0P5 Q9K0P5]
+
** [http://www.uniprot.org/uniprot/O67258 O67258]
−
** [http://www.uniprot.org/uniprot/Q9X224 Q9X224]
+
** [http://www.uniprot.org/uniprot/O84002 O84002]
−
** [http://www.uniprot.org/uniprot/Q9Y9P0 Q9Y9P0]
+
** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
−
** [http://www.uniprot.org/uniprot/Q9RWP3 Q9RWP3]
+
** [http://www.uniprot.org/uniprot/P32048 P32048]
−
** [http://www.uniprot.org/uniprot/O66737 O66737]
+
** [http://www.uniprot.org/uniprot/P37879 P37879]
−
** [http://www.uniprot.org/uniprot/O28650 O28650]
+
** [http://www.uniprot.org/uniprot/Q48986 Q48986]
−
** [http://www.uniprot.org/uniprot/O30304 O30304]
+
** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
−
** [http://www.uniprot.org/uniprot/Q9CEK7 Q9CEK7]
+
** [http://www.uniprot.org/uniprot/P37477 P37477]
−
** [http://www.uniprot.org/uniprot/O27916 O27916]
+
** [http://www.uniprot.org/uniprot/P75500 P75500]
−
** [http://www.uniprot.org/uniprot/O05237 O05237]
+
** [http://www.uniprot.org/uniprot/P95970 P95970]
−
** [http://www.uniprot.org/uniprot/Q9YE99 Q9YE99]
+
** [http://www.uniprot.org/uniprot/P73443 P73443]
−
** [http://www.uniprot.org/uniprot/O25383 O25383]
+
** [http://www.uniprot.org/uniprot/P15180 P15180]
−
** [http://www.uniprot.org/uniprot/O27638 O27638]
+
** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
−
** [http://www.uniprot.org/uniprot/O96142 O96142]
+
** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
−
** [http://www.uniprot.org/uniprot/Q9ZLG5 Q9ZLG5]
+
** [http://www.uniprot.org/uniprot/Q43776 Q43776]
−
** [http://www.uniprot.org/uniprot/P00507 P00507]
+
** [http://www.uniprot.org/uniprot/O74059 O74059]
−
** [http://www.uniprot.org/uniprot/P44425 P44425]
+
** [http://www.uniprot.org/uniprot/O30522 O30522]
−
** [http://www.uniprot.org/uniprot/Q59569 Q59569]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/Q59197 Q59197]
+
{{#set: common name=Lysyl-tRNA Synthetase}}
−
** [http://www.uniprot.org/uniprot/P37833 P37833]
+
{{#set: common name=Lysyl-tRNA ligase}}
−
** [http://www.uniprot.org/uniprot/O48599 O48599]
+
{{#set: ec number=EC-6.1.1.6}}
−
** [http://www.uniprot.org/uniprot/O33822 O33822]
+
{{#set: gene associated=Ec-19_000900|Ec-01_005790}}
−
** [http://www.uniprot.org/uniprot/P05201 P05201]
+
{{#set: in pathway=TRNA-CHARGING-PWY}}
−
** [http://www.uniprot.org/uniprot/P05202 P05202]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P14909 P14909]
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
** [http://www.uniprot.org/uniprot/P17174 P17174]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P33097 P33097]
+
−
** [http://www.uniprot.org/uniprot/Q43057 Q43057]
+
−
** [http://www.uniprot.org/uniprot/Q43305 Q43305]
+
−
** [http://www.uniprot.org/uniprot/Q42794 Q42794]
+
−
** [http://www.uniprot.org/uniprot/P12344 P12344]
+
−
** [http://www.uniprot.org/uniprot/Q01802 Q01802]
+
−
** [http://www.uniprot.org/uniprot/Q40325 Q40325]
+
−
** [http://www.uniprot.org/uniprot/P36692 P36692]
+
−
** [http://www.uniprot.org/uniprot/P28011 P28011]
+
−
** [http://www.uniprot.org/uniprot/Q42391 Q42391]
+
−
** [http://www.uniprot.org/uniprot/Q9L0L5 Q9L0L5]
+
−
** [http://www.uniprot.org/uniprot/Q53951 Q53951]
+
−
** [http://www.uniprot.org/uniprot/Q42803 Q42803]
+
−
** [http://www.uniprot.org/uniprot/Q42425 Q42425]
+
−
** [http://www.uniprot.org/uniprot/Q55128 Q55128]
+
−
** [http://www.uniprot.org/uniprot/P72859 P72859]
+
−
** [http://www.uniprot.org/uniprot/Q55453 Q55453]
+
−
** [http://www.uniprot.org/uniprot/Q55679 Q55679]
+
−
** [http://www.uniprot.org/uniprot/O48598 O48598]
+
−
** [http://www.uniprot.org/uniprot/Q42991 Q42991]
+
−
** [http://www.uniprot.org/uniprot/P46248 P46248]
+
−
** [http://www.uniprot.org/uniprot/O48548 O48548]
+
−
** [http://www.uniprot.org/uniprot/Q60013 Q60013]
+
−
** [http://www.uniprot.org/uniprot/P28734 P28734]
+
−
** [http://www.uniprot.org/uniprot/Q17994 Q17994]
+
−
** [http://www.uniprot.org/uniprot/Q17983 Q17983]
+
−
** [http://www.uniprot.org/uniprot/Q22066 Q22066]
+
−
** [http://www.uniprot.org/uniprot/Q22067 Q22067]
+
−
** [http://www.uniprot.org/uniprot/O01804 O01804]
+
−
** [http://www.uniprot.org/uniprot/O54170 O54170]
+
−
** [http://www.uniprot.org/uniprot/O42652 O42652]
+
−
** [http://www.uniprot.org/uniprot/O94320 O94320]
+
−
** [http://www.uniprot.org/uniprot/P46644 P46644]
+
−
** [http://www.uniprot.org/uniprot/P00504 P00504]
+
−
** [http://www.uniprot.org/uniprot/P00508 P00508]
+
−
** [http://www.uniprot.org/uniprot/P00509 P00509]
+
−
** [http://www.uniprot.org/uniprot/P00505 P00505]
+
−
** [http://www.uniprot.org/uniprot/P00503 P00503]
+
−
** [http://www.uniprot.org/uniprot/P00506 P00506]
+
−
** [http://www.uniprot.org/uniprot/P26563 P26563]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=Aspartate Aminotransferase}}
+
−
{{#set: common name=aspartate aminotransferase}}
+
−
{{#set: common name=Pyridoxal phosphate-dependent transferase, major region, subdomain 1}}
+
−
{{#set: ec number=EC-2.6.1.1}}
+
−
{{#set: gene associated=Ec-23_003500|Ec-03_003270|Ec-01_007480}}
+
−
{{#set: in pathway=PWY-5913|PWY-7383|ASPARTATE-DEG1-PWY|ASPARTATESYN-PWY|PWY-7117|GLUTDEG-PWY|PWY-7115|MALATE-ASPARTATE-SHUTTLE-PWY|ASPARAGINE-DEG1-PWY-1}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:02, 21 March 2018

Reaction LYSINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Lysyl-tRNA Synthetase
    • Lysyl-tRNA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-lysine[c] + 1 ATP[c] + 1 H+[c] + 1 a tRNAlys[c] => 1 diphosphate[c] + 1 an L-lysyl-[tRNAlys][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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