Difference between revisions of "UDPGLUCEPIM-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-8594 CPD-8594] == * common name: ** Lewis x epitope * Synonym(s): ** 1,4-β-D-galactosy...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] == * direction: ** REVERSIBLE * common name: ** UDP-glucose 4-epim...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-8594 CPD-8594] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] ==
 +
* direction:
 +
** REVERSIBLE
 
* common name:
 
* common name:
−
** Lewis x epitope
+
** UDP-glucose 4-epimerase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.1.3.2 EC-5.1.3.2]
 
* Synonym(s):
 
* Synonym(s):
−
** 1,4-β-D-galactosyl-(α-1,3-L-fucosyl)-N-acetyl-D-glucosaminyl-[glycoprotein]
 
−
** 1,4-β-D-galactosyl-(α-1,3-L-fucosyl)-N-acetyl-D-glucosaminyl-R
 
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** β-D-galactosyl-(1→4)-[α-L-fucosyl-(1→3)]-N-acetyl-D-glucosaminyl-R
 
  
−
== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
−
* [[GALACTOSIDE-3-FUCOSYLTRANSFERASE-RXN]]
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** 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
 +
** 1 UDP-&alpha;-D-glucose[c] '''<=>''' 1 UDP-&alpha;-D-galactose[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-04_000280]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-04_004180]]
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** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-05_006710]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
 +
** Source: [[orthology-aragem]]
 +
== Pathways  ==
 +
* [[PWY-7344]], UDP-D-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7344 PWY-7344]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397]
 +
** '''1''' reactions found over '''17''' reactions in the full pathway
 +
* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY]
 +
** '''6''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7328 PWY-7328]
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: common name=Lewis x epitope}}
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* RHEA:
−
{{#set: common name=1,4-&beta;-D-galactosyl-(&alpha;-1,3-L-fucosyl)-N-acetyl-D-glucosaminyl-[glycoprotein]|1,4-&beta;-D-galactosyl-(&alpha;-1,3-L-fucosyl)-N-acetyl-D-glucosaminyl-R|&beta;-D-galactosyl-(1&rarr;4)-[&alpha;-L-fucosyl-(1&rarr;3)]-N-acetyl-D-glucosaminyl-R}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22168 22168]
−
{{#set: produced by=GALACTOSIDE-3-FUCOSYLTRANSFERASE-RXN}}
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* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
 +
* UNIPROT:
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** [http://www.uniprot.org/uniprot/P35673 P35673]
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** [http://www.uniprot.org/uniprot/P22715 P22715]
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** [http://www.uniprot.org/uniprot/P21977 P21977]
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** [http://www.uniprot.org/uniprot/P24325 P24325]
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** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
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** [http://www.uniprot.org/uniprot/Q57664 Q57664]
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** [http://www.uniprot.org/uniprot/P55180 P55180]
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** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
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** [http://www.uniprot.org/uniprot/P56997 P56997]
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** [http://www.uniprot.org/uniprot/Q59083 Q59083]
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** [http://www.uniprot.org/uniprot/Q44016 Q44016]
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** [http://www.uniprot.org/uniprot/Q45291 Q45291]
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** [http://www.uniprot.org/uniprot/P96995 P96995]
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** [http://www.uniprot.org/uniprot/P45602 P45602]
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** [http://www.uniprot.org/uniprot/P18645 P18645]
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** [http://www.uniprot.org/uniprot/P26503 P26503]
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** [http://www.uniprot.org/uniprot/P40801 P40801]
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** [http://www.uniprot.org/uniprot/Q05026 Q05026]
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** [http://www.uniprot.org/uniprot/P56985 P56985]
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** [http://www.uniprot.org/uniprot/Q51148 Q51148]
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** [http://www.uniprot.org/uniprot/Q56093 Q56093]
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** [http://www.uniprot.org/uniprot/Q42605 Q42605]
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** [http://www.uniprot.org/uniprot/Q60109 Q60109]
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** [http://www.uniprot.org/uniprot/P72903 P72903]
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** [http://www.uniprot.org/uniprot/P72915 P72915]
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** [http://www.uniprot.org/uniprot/O66256 O66256]
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** [http://www.uniprot.org/uniprot/O64749 O64749]
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** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
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** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
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** [http://www.uniprot.org/uniprot/Q43070 Q43070]
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** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
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** [http://www.uniprot.org/uniprot/O65780 O65780]
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** [http://www.uniprot.org/uniprot/O65781 O65781]
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** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
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** [http://www.uniprot.org/uniprot/P04397 P04397]
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** [http://www.uniprot.org/uniprot/P09147 P09147]
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** [http://www.uniprot.org/uniprot/P13226 P13226]
 +
** [http://www.uniprot.org/uniprot/P09609 P09609]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=UDP-glucose 4-epimerase}}
 +
{{#set: ec number=EC-5.1.3.2}}
 +
{{#set: gene associated=Ec-04_000280|Ec-04_004180|Ec-05_006710}}
 +
{{#set: in pathway=PWY-7344|PWY-6397|COLANSYN-PWY|PWY-6527|PWY-7328|PWY-6317|PWY66-422|PWY-3821}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:03, 21 March 2018

Reaction UDPGLUCEPIM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • UDP-glucose 4-epimerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 UDP-α-D-glucose[c] <=> 1 UDP-α-D-galactose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7344, UDP-D-galactose biosynthesis: PWY-7344
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6397, mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: PWY-6397
    • 1 reactions found over 17 reactions in the full pathway
  • COLANSYN-PWY, colanic acid building blocks biosynthesis: COLANSYN-PWY
    • 6 reactions found over 11 reactions in the full pathway
  • PWY-6527, stachyose degradation: PWY-6527
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7328, superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: PWY-7328
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-6317, D-galactose degradation I (Leloir pathway): PWY-6317
    • 5 reactions found over 5 reactions in the full pathway
  • PWY66-422, D-galactose degradation V (Leloir pathway): PWY66-422
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-3821, D-galactose degradation III: PWY-3821
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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