Difference between revisions of "RXN-12726"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=COA-PWY-1 COA-PWY-1] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12726 RXN-12726] == * direction: ** LEFT-TO-RIGHT * common name: ** Tryptophan synthase beta su...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=COA-PWY-1 COA-PWY-1] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12726 RXN-12726] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** coenzyme A biosynthesis II (mammalian)
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** Tryptophan synthase beta subunit-like PLP-dependent enzyme
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** Cysteine synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.47 EC-2.5.1.47]
 
* Synonym(s):
 
* Synonym(s):
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** CoA biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''5''' reactions in the full pathway
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* With identifiers:
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* [[DEPHOSPHOCOAKIN-RXN]]
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** 1 [[CPD-678]][c] '''+''' 1 [[ACETYLSERINE]][c] '''=>''' 1 [[ACET]][c] '''+''' 1 [[L-SELENOCYSTEINE]][c] '''+''' 1 [[PROTON]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-02_004890]]
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** 1 hydrogen selenide[c] '''+''' 1 O-acetyl-L-serine[c] '''=>''' 1 acetate[c] '''+''' 1 L-selenocysteine[c] '''+''' 1 H+[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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* [[P-PANTOCYSDECARB-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 associated gene(s):
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* Gene: [[Ec-01_011260]]
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*** [[Ec-03_000890]]
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** Source: [[annotation-esiliculosus_genome]]
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** 1 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[orthology-aragem]]
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* Gene: [[Ec-01_012080]]
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* [[PANTEPADENYLYLTRAN-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 0 associated gene:
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*** Assignment: EC-NUMBER
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-aragem]]
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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* Gene: [[Ec-00_008830]]
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* [[PANTOTHENATE-KIN-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 2 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Ec-01_003730]]
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** Source: [[orthology-aragem]]
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*** [[Ec-11_006230]]
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== Pathways  ==
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** 1 reconstruction source(s) associated:
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* [[PWY-6936]], seleno-amino acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936]
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*** [[annotation-esiliculosus_genome]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reaction(s) not found ==
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-555 RXN66-555]
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-40674}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=coenzyme A biosynthesis II (mammalian)}}
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{{#set: common name=Tryptophan synthase beta subunit-like PLP-dependent enzyme}}
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{{#set: common name=CoA biosynthesis}}
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{{#set: common name=Cysteine synthase}}
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{{#set: reaction found=4}}
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{{#set: ec number=EC-2.5.1.47}}
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{{#set: total reaction=5}}
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{{#set: gene associated=Ec-01_011260|Ec-01_012080|Ec-00_008830}}
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{{#set: completion rate=80.0}}
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{{#set: in pathway=PWY-6936}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:03, 21 March 2018

Reaction RXN-12726

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Tryptophan synthase beta subunit-like PLP-dependent enzyme
    • Cysteine synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6936, seleno-amino acid biosynthesis: PWY-6936
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-12726&oldid=24219"