Difference between revisions of "RXN-13614"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PRPP PRPP] == * smiles: ** C(OP(=O)([O-])[O-])C1(OC(OP([O-])(=O)OP([O-])(=O)[O-])C(O)C(O)1) * i...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] == * direction: ** LEFT-TO-RIGHT * common name: ** long chain acyl-coA synthet...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PRPP PRPP] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] ==
−
* smiles:
+
* direction:
−
** C(OP(=O)([O-])[O-])C1(OC(OP([O-])(=O)OP([O-])(=O)[O-])C(O)C(O)1)
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=PQGCEDQWHSBAJP-TXICZTDVSA-I
+
 
* common name:
 
* common name:
−
** 5-phospho-α-D-ribose 1-diphosphate
+
** long chain acyl-coA synthetase
−
* molecular weight:
+
** long chain acyl-CoA synthetase
−
** 385.031   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
−
** PRPP
 
−
** 5-phosphoribosyl 1-pyrophosphate
 
−
** 5-phosphoribosyl diphosphate
 
−
** 5-phosphoribosyl-1-PP
 
−
** 5-phosphoribosyl-PP
 
−
** 5-phosphoribosyl-1-pyrophosphate
 
−
** 5-phosphoribosylpyrophosphate
 
−
** phosphoribosylpyrophosphate
 
−
** 5-phospho-ribosyl-pyrophosphate
 
−
** α-D-5-phosphoribosylPP
 
−
** α-D-5-P-RibosylPP
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[URACIL-PRIBOSYLTRANS-RXN]]
+
* With identifiers:
−
* [[ADENPRIBOSYLTRAN-RXN]]
+
** 1 [[CO-A]][c] '''+''' 1 [[CPD-3617]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-10267]][c] '''+''' 1 [[AMP]][c]
−
* [[QUINOPRIBOTRANS-RXN]]
+
* With common name(s):
−
* [[NICOTINATEPRIBOSYLTRANS-RXN]]
+
** 1 coenzyme A[c] '''+''' 1 decanoate[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 decanoyl-CoA[c] '''+''' 1 AMP[c]
−
== Reaction(s) known to produce the compound ==
+
 
−
== Reaction(s) of unknown directionality ==
+
== Genes associated with this reaction  ==
−
* [[HYPOXANPRIBOSYLTRAN-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[OROPRIBTRANS-RXN]]
+
* Gene: [[Ec-12_008720]]
−
* [[GUANPRIBOSYLTRAN-RXN]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[PRPPSYN-RXN]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[RXN-14270]]
+
* Gene: [[Ec-01_001560]]
−
* [[ATPPHOSPHORIBOSYLTRANS-RXN]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[PRTRANS-RXN]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[PRPPAMIDOTRANS-RXN]]
+
* Gene: [[Ec-02_006430]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-03_003710]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* CAS : 13270-65-0
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* BIGG : 33926
+
{{#set: common name=long chain acyl-coA synthetase}}
−
* PUBCHEM:
+
{{#set: common name=long chain acyl-CoA synthetase}}
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=20848918 20848918]
+
{{#set: ec number=EC-6.2.1.3}}
−
* HMDB : HMDB00280
+
{{#set: gene associated=Ec-12_008720|Ec-01_001560|Ec-02_006430|Ec-03_003710}}
−
* LIGAND-CPD:
+
{{#set: in pathway=PWY-7094}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C00119 C00119]
+
{{#set: reconstruction category=annotation}}
−
* CHEMSPIDER:
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
** [http://www.chemspider.com/Chemical-Structure.20171339.html 20171339]
+
{{#set: reconstruction tool=pathwaytools}}
−
* CHEBI:
+
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58017 58017]
+
−
* METABOLIGHTS : MTBLC58017
+
−
{{#set: smiles=C(OP(=O)([O-])[O-])C1(OC(OP([O-])(=O)OP([O-])(=O)[O-])C(O)C(O)1)}}
+
−
{{#set: inchi key=InChIKey=PQGCEDQWHSBAJP-TXICZTDVSA-I}}
+
−
{{#set: common name=5-phospho-α-D-ribose 1-diphosphate}}
+
−
{{#set: molecular weight=385.031    }}
+
−
{{#set: common name=PRPP|5-phosphoribosyl 1-pyrophosphate|5-phosphoribosyl diphosphate|5-phosphoribosyl-1-PP|5-phosphoribosyl-PP|5-phosphoribosyl-1-pyrophosphate|5-phosphoribosylpyrophosphate|phosphoribosylpyrophosphate|5-phospho-ribosyl-pyrophosphate|α-D-5-phosphoribosylPP|α-D-5-P-RibosylPP}}
+
−
{{#set: consumed by=URACIL-PRIBOSYLTRANS-RXN|ADENPRIBOSYLTRAN-RXN|QUINOPRIBOTRANS-RXN|NICOTINATEPRIBOSYLTRANS-RXN}}
+
−
{{#set: consumed or produced by=HYPOXANPRIBOSYLTRAN-RXN|OROPRIBTRANS-RXN|GUANPRIBOSYLTRAN-RXN|PRPPSYN-RXN|RXN-14270|ATPPHOSPHORIBOSYLTRANS-RXN|PRTRANS-RXN|PRPPAMIDOTRANS-RXN}}
+

Latest revision as of 20:04, 21 March 2018

Reaction RXN-13614

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long chain acyl-coA synthetase
    • long chain acyl-CoA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 decanoate[c] + 1 ATP[c] => 1 diphosphate[c] + 1 decanoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7094, fatty acid salvage: PWY-7094
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-13614&oldid=24358"