Difference between revisions of "RXN-13614"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PRPP PRPP] == * smiles: ** C(OP(=O)([O-])[O-])C1(OC(OP([O-])(=O)OP([O-])(=O)[O-])C(O)C(O)1) * i...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] == * direction: ** LEFT-TO-RIGHT * common name: ** long chain acyl-coA synthet...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PRPP PRPP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] ==
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* smiles:
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* direction:
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** C(OP(=O)([O-])[O-])C1(OC(OP([O-])(=O)OP([O-])(=O)[O-])C(O)C(O)1)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=PQGCEDQWHSBAJP-TXICZTDVSA-I
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* common name:
 
* common name:
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** 5-phospho-α-D-ribose 1-diphosphate
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** long chain acyl-coA synthetase
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* molecular weight:
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** long chain acyl-CoA synthetase
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** 385.031   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** PRPP
 
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** 5-phosphoribosyl 1-pyrophosphate
 
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** 5-phosphoribosyl diphosphate
 
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** 5-phosphoribosyl-1-PP
 
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** 5-phosphoribosyl-PP
 
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** 5-phosphoribosyl-1-pyrophosphate
 
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** 5-phosphoribosylpyrophosphate
 
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** phosphoribosylpyrophosphate
 
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** 5-phospho-ribosyl-pyrophosphate
 
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** α-D-5-phosphoribosylPP
 
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** α-D-5-P-RibosylPP
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[URACIL-PRIBOSYLTRANS-RXN]]
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* With identifiers:
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* [[ADENPRIBOSYLTRAN-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[CPD-3617]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-10267]][c] '''+''' 1 [[AMP]][c]
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* [[QUINOPRIBOTRANS-RXN]]
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* With common name(s):
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* [[NICOTINATEPRIBOSYLTRANS-RXN]]
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** 1 coenzyme A[c] '''+''' 1 decanoate[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 decanoyl-CoA[c] '''+''' 1 AMP[c]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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* [[HYPOXANPRIBOSYLTRAN-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[OROPRIBTRANS-RXN]]
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* Gene: [[Ec-12_008720]]
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* [[GUANPRIBOSYLTRAN-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PRPPSYN-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[RXN-14270]]
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* Gene: [[Ec-01_001560]]
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* [[ATPPHOSPHORIBOSYLTRANS-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PRTRANS-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[PRPPAMIDOTRANS-RXN]]
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* Gene: [[Ec-02_006430]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-03_003710]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 13270-65-0
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{{#set: direction=LEFT-TO-RIGHT}}
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* BIGG : 33926
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{{#set: common name=long chain acyl-coA synthetase}}
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* PUBCHEM:
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{{#set: common name=long chain acyl-CoA synthetase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=20848918 20848918]
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{{#set: ec number=EC-6.2.1.3}}
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* HMDB : HMDB00280
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{{#set: gene associated=Ec-12_008720|Ec-01_001560|Ec-02_006430|Ec-03_003710}}
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* LIGAND-CPD:
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{{#set: in pathway=PWY-7094}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00119 C00119]
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{{#set: reconstruction category=annotation}}
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* CHEMSPIDER:
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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** [http://www.chemspider.com/Chemical-Structure.20171339.html 20171339]
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{{#set: reconstruction tool=pathwaytools}}
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* CHEBI:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58017 58017]
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* METABOLIGHTS : MTBLC58017
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{{#set: smiles=C(OP(=O)([O-])[O-])C1(OC(OP([O-])(=O)OP([O-])(=O)[O-])C(O)C(O)1)}}
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{{#set: inchi key=InChIKey=PQGCEDQWHSBAJP-TXICZTDVSA-I}}
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{{#set: common name=5-phospho-α-D-ribose 1-diphosphate}}
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{{#set: molecular weight=385.031    }}
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{{#set: common name=PRPP|5-phosphoribosyl 1-pyrophosphate|5-phosphoribosyl diphosphate|5-phosphoribosyl-1-PP|5-phosphoribosyl-PP|5-phosphoribosyl-1-pyrophosphate|5-phosphoribosylpyrophosphate|phosphoribosylpyrophosphate|5-phospho-ribosyl-pyrophosphate|α-D-5-phosphoribosylPP|α-D-5-P-RibosylPP}}
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{{#set: consumed by=URACIL-PRIBOSYLTRANS-RXN|ADENPRIBOSYLTRAN-RXN|QUINOPRIBOTRANS-RXN|NICOTINATEPRIBOSYLTRANS-RXN}}
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{{#set: consumed or produced by=HYPOXANPRIBOSYLTRAN-RXN|OROPRIBTRANS-RXN|GUANPRIBOSYLTRAN-RXN|PRPPSYN-RXN|RXN-14270|ATPPHOSPHORIBOSYLTRANS-RXN|PRTRANS-RXN|PRPPAMIDOTRANS-RXN}}
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Latest revision as of 19:04, 21 March 2018

Reaction RXN-13614

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long chain acyl-coA synthetase
    • long chain acyl-CoA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 decanoate[c] + 1 ATP[c] => 1 diphosphate[c] + 1 decanoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7094, fatty acid salvage: PWY-7094
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-13614&oldid=24358"