Difference between revisions of "GPPSYN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORPHYRINOGEN PROTOPORPHYRINOGEN] == * smiles: ** C=CC1(=C5(NC(=C1C)CC2(=C(C(=C(N2)CC3(NC(...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] == * direction: ** REVERSIBLE * common name: ** prenyltransferase ** Farnesy...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORPHYRINOGEN PROTOPORPHYRINOGEN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] ==
−
* smiles:
+
* direction:
−
** C=CC1(=C5(NC(=C1C)CC2(=C(C(=C(N2)CC3(NC(=C(C=3CCC([O-])=O)C)CC4(=C(C(=C(N4)C5)C)C=C)))CCC(=O)[O-])C)))
+
** REVERSIBLE
−
* inchi key:
+
−
** InChIKey=UHSGPDMIQQYNAX-UHFFFAOYSA-L
+
 
* common name:
 
* common name:
−
** protoporphyrinogen IX
+
** prenyltransferase
−
* molecular weight:
+
** Farnesyl pyrophosphate synthase
−
** 566.699   
+
** Prenyltransferase/squalene oxidase
 +
** geranyl-diphosphate synthase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.5.1.1 EC-2.5.1.1]
 
* Synonym(s):
 
* Synonym(s):
−
** protoporphyrinogen
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[PROTOPORGENOXI-RXN]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[CPD-4211]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[GERANYL-PP]][c]
−
* [[RXN0-1461]]
+
* With common name(s):
−
* [[HEMN-RXN]]
+
** 1 isopentenyl diphosphate[c] '''+''' 1 dimethylallyl diphosphate[c] '''<=>''' 1 diphosphate[c] '''+''' 1 geranyl diphosphate[c]
−
== Reaction(s) of unknown directionality ==
+
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-21_000990]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_006550]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-08_002270]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-00_007350]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-25_002110]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-10_003020]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-18_000990]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-26_003280]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-17_001240]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-16_004330]]
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-07_006170]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-24_003910]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
== Pathways  ==
 +
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5122]], geranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5122 PWY-5122]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7659]], viridicatumtoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7659 PWY-7659]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7410]], ipsdienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7410 PWY-7410]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* CAS : 7412-77-3
+
* RHEA:
−
* BIGG : 36764
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=20849104 20849104]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
−
* HMDB : HMDB01097
+
* UNIPROT:
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/P08524 P08524]
−
** [http://www.genome.jp/dbget-bin/www_bget?C01079 C01079]
+
** [http://www.uniprot.org/uniprot/P05369 P05369]
−
* CHEMSPIDER:
+
** [http://www.uniprot.org/uniprot/P14324 P14324]
−
** [http://www.chemspider.com/Chemical-Structure.20171538.html 20171538]
+
** [http://www.uniprot.org/uniprot/P46376 P46376]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/Q45220 Q45220]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57307 57307]
+
** [http://www.uniprot.org/uniprot/P49350 P49350]
−
* METABOLIGHTS : MTBLC57307
+
** [http://www.uniprot.org/uniprot/Q50891 Q50891]
−
{{#set: smiles=C=CC1(=C5(NC(=C1C)CC2(=C(C(=C(N2)CC3(NC(=C(C=3CCC([O-])=O)C)CC4(=C(C(=C(N4)C5)C)C=C)))CCC(=O)[O-])C)))}}
+
** [http://www.uniprot.org/uniprot/P49349 P49349]
−
{{#set: inchi key=InChIKey=UHSGPDMIQQYNAX-UHFFFAOYSA-L}}
+
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
−
{{#set: common name=protoporphyrinogen IX}}
+
** [http://www.uniprot.org/uniprot/P49351 P49351]
−
{{#set: molecular weight=566.699    }}
+
** [http://www.uniprot.org/uniprot/P49352 P49352]
−
{{#set: common name=protoporphyrinogen}}
+
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
−
{{#set: consumed by=PROTOPORGENOXI-RXN}}
+
** [http://www.uniprot.org/uniprot/O24241 O24241]
−
{{#set: produced by=RXN0-1461|HEMN-RXN}}
+
** [http://www.uniprot.org/uniprot/O24242 O24242]
 +
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
 +
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
 +
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
 +
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
 +
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
 +
** [http://www.uniprot.org/uniprot/P49353 P49353]
 +
** [http://www.uniprot.org/uniprot/O04882 O04882]
 +
** [http://www.uniprot.org/uniprot/O65004 O65004]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=prenyltransferase}}
 +
{{#set: common name=Farnesyl pyrophosphate synthase}}
 +
{{#set: common name=Prenyltransferase/squalene oxidase}}
 +
{{#set: common name=geranyl-diphosphate synthase}}
 +
{{#set: ec number=EC-2.5.1.1}}
 +
{{#set: gene associated=Ec-21_000990|Ec-14_006550|Ec-08_002270|Ec-00_007350|Ec-25_002110|Ec-10_003020|Ec-18_000990|Ec-26_003280|Ec-17_001240|Ec-16_004330|Ec-07_006170|Ec-24_003910}}
 +
{{#set: in pathway=PWY-7736|PWY-6859|PWY-7709|PWY-6383|PWY-7182|PWY-7141|PWY-5123|PWY-5122|PWY-7102|PWY-7659|PWY-7410}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:07, 21 March 2018

Reaction GPPSYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • prenyltransferase
    • Farnesyl pyrophosphate synthase
    • Prenyltransferase/squalene oxidase
    • geranyl-diphosphate synthase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] + 1 dimethylallyl diphosphate[c] <=> 1 diphosphate[c] + 1 geranyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7709, (3R)-linalool biosynthesis: PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7182, linalool biosynthesis I: PWY-7182
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7141, (3S)-linalool biosynthesis: PWY-7141
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5122, geranyl diphosphate biosynthesis: PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7659, viridicatumtoxin biosynthesis: PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7410, ipsdienol biosynthesis: PWY-7410
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=GPPSYN-RXN&oldid=24646"