Difference between revisions of "GPPSYN-RXN"

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(Created page with "Category:Gene == Gene Ec-19_003290 == * left end position: ** 3573126 * transcription direction: ** NEGATIVE * right end position: ** 3581818 * centisome position: ** 59.8...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] == * direction: ** REVERSIBLE * common name: ** prenyltransferase ** Farnesy...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-19_003290 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] ==
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* left end position:
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* direction:
−
** 3573126
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** REVERSIBLE
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* transcription direction:
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* common name:
−
** NEGATIVE
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** prenyltransferase
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* right end position:
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** Farnesyl pyrophosphate synthase
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** 3581818
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** Prenyltransferase/squalene oxidase
−
* centisome position:
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** geranyl-diphosphate synthase
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** 59.84446   
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* ec number:
 +
** [http://enzyme.expasy.org/EC/2.5.1.1 EC-2.5.1.1]
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0402_0008
 
−
** Esi0402_0008
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[6.3.2.25-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[CPD-4211]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[GERANYL-PP]][c]
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***automated-name-match
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* With common name(s):
−
== Pathways associated ==
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** 1 isopentenyl diphosphate[c] '''+''' 1 dimethylallyl diphosphate[c] '''<=>''' 1 diphosphate[c] '''+''' 1 geranyl diphosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-21_000990]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-14_006550]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-08_002270]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
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* Gene: [[Ec-00_007350]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
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* Gene: [[Ec-25_002110]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-10_003020]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-18_000990]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-26_003280]]
 +
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-17_001240]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-16_004330]]
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-07_006170]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-24_003910]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
== Pathways  ==
 +
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5122]], geranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5122 PWY-5122]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7659]], viridicatumtoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7659 PWY-7659]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7410]], ipsdienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7410 PWY-7410]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
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* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3573126}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
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{{#set: right end position=3581818}}
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* LIGAND-RXN:
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{{#set: centisome position=59.84446    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
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{{#set: common name=Esi_0402_0008|Esi0402_0008}}
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* UNIPROT:
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{{#set: reaction associated=6.3.2.25-RXN}}
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** [http://www.uniprot.org/uniprot/P08524 P08524]
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** [http://www.uniprot.org/uniprot/P05369 P05369]
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** [http://www.uniprot.org/uniprot/P14324 P14324]
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** [http://www.uniprot.org/uniprot/P46376 P46376]
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** [http://www.uniprot.org/uniprot/Q45220 Q45220]
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** [http://www.uniprot.org/uniprot/P49350 P49350]
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** [http://www.uniprot.org/uniprot/Q50891 Q50891]
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** [http://www.uniprot.org/uniprot/P49349 P49349]
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** [http://www.uniprot.org/uniprot/Q09152 Q09152]
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** [http://www.uniprot.org/uniprot/P49351 P49351]
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** [http://www.uniprot.org/uniprot/P49352 P49352]
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** [http://www.uniprot.org/uniprot/Q43315 Q43315]
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** [http://www.uniprot.org/uniprot/O24241 O24241]
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** [http://www.uniprot.org/uniprot/O24242 O24242]
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** [http://www.uniprot.org/uniprot/Q92334 Q92334]
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** [http://www.uniprot.org/uniprot/Q92218 Q92218]
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** [http://www.uniprot.org/uniprot/Q92235 Q92235]
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** [http://www.uniprot.org/uniprot/Q92250 Q92250]
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** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
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** [http://www.uniprot.org/uniprot/P49353 P49353]
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** [http://www.uniprot.org/uniprot/O04882 O04882]
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** [http://www.uniprot.org/uniprot/O65004 O65004]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=prenyltransferase}}
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{{#set: common name=Farnesyl pyrophosphate synthase}}
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{{#set: common name=Prenyltransferase/squalene oxidase}}
 +
{{#set: common name=geranyl-diphosphate synthase}}
 +
{{#set: ec number=EC-2.5.1.1}}
 +
{{#set: gene associated=Ec-21_000990|Ec-14_006550|Ec-08_002270|Ec-00_007350|Ec-25_002110|Ec-10_003020|Ec-18_000990|Ec-26_003280|Ec-17_001240|Ec-16_004330|Ec-07_006170|Ec-24_003910}}
 +
{{#set: in pathway=PWY-7736|PWY-6859|PWY-7709|PWY-6383|PWY-7182|PWY-7141|PWY-5123|PWY-5122|PWY-7102|PWY-7659|PWY-7410}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:07, 21 March 2018

Reaction GPPSYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • prenyltransferase
    • Farnesyl pyrophosphate synthase
    • Prenyltransferase/squalene oxidase
    • geranyl-diphosphate synthase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] + 1 dimethylallyl diphosphate[c] <=> 1 diphosphate[c] + 1 geranyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7709, (3R)-linalool biosynthesis: PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7182, linalool biosynthesis I: PWY-7182
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7141, (3S)-linalool biosynthesis: PWY-7141
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5122, geranyl diphosphate biosynthesis: PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7659, viridicatumtoxin biosynthesis: PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7410, ipsdienol biosynthesis: PWY-7410
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=GPPSYN-RXN&oldid=24646"