Difference between revisions of "TCA"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11210 RXN-11210] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] ** [http://m...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11210 RXN-11210] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://enzyme.expasy.org/EC/3.5.1.6 EC-3.5.1.6]
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* common name:
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** TCA cycle I (prokaryotic)
 
* Synonym(s):
 
* Synonym(s):
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** tricarboxylic acid cycle
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** citric acid cycle
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** Krebs cycle
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** Szent-Gyorgyi-Krebs cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''9''' reactions found over '''10''' reactions in the full pathway
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** 2 [[PROTON]][c] '''+''' 1 [[3-UREIDO-ISOBUTYRATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-471]][c]
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* [[2OXOGLUTARATEDEH-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 2 H+[c] '''+''' 1 (R)-3-ureido-isobutanoate[c] '''+''' 1 H2O[c] '''=>''' 1 CO2[c] '''+''' 1 ammonium[c] '''+''' 1 (R)-3-amino-2-methylpropanoate[c]
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*** [[Ec-21_002300]]
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*** [[Ec-25_000020]]
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== Genes associated with this reaction  ==
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*** [[Ec-27_004160]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[Ec-16_003010]]
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*** [[annotation-esiliculosus_genome]]
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** [[pantograph]]-[[aragem]]
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* [[ACONITATEDEHYDR-RXN]]
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== Pathways  ==
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** 2 associated gene(s):
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* [[PWY-6430]], thymine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6430 PWY-6430]
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*** [[Ec-16_001000]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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*** [[Ec-12_000170]]
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* Category: [[orthology]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[orthology-aragem]]
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* [[ACONITATEHYDR-RXN]]
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*** Tool: [[pantograph]]
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** 2 associated gene(s):
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*** [[Ec-16_001000]]
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*** [[Ec-12_000170]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[CITSYN-RXN]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Ec-25_001360]]
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*** [[Ec-23_003460]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[ISOCITDEH-RXN]]
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** 1 associated gene(s):
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*** [[Ec-11_003080]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Ec-10_006200]]
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*** [[Ec-02_003100]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[Ec-10_000030]]
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*** [[Ec-02_001020]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
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** 6 associated gene(s):
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*** [[Ec-07_007310]]
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*** [[Ec-27_006560]]
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*** [[Ec-07_002870]]
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*** [[Ec-11_000360]]
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*** [[Ec-05_003640]]
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*** [[Ec-21_003470]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEHYDROGENASE-ACCEPTOR-RXN MALATE-DEHYDROGENASE-ACCEPTOR-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ECOCYC:
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{{#set: ec number=EC-3.5.1.6}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TCA TCA]
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{{#set: gene associated=Ec-16_003010}}
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* ARACYC:
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{{#set: in pathway=PWY-6430}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=TCA TCA]
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{{#set: reconstruction category=orthology}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: reconstruction source=orthology-aragem}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: common name=TCA cycle I (prokaryotic)}}
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{{#set: common name=tricarboxylic acid cycle|citric acid cycle|Krebs cycle|Szent-Gyorgyi-Krebs cycle}}
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{{#set: reaction found=9}}
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{{#set: total reaction=10}}
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{{#set: completion rate=90.0}}

Latest revision as of 19:07, 21 March 2018

Pathway TCA

  • taxonomic range:
  • common name:
    • TCA cycle I (prokaryotic)
  • Synonym(s):
    • tricarboxylic acid cycle
    • citric acid cycle
    • Krebs cycle
    • Szent-Gyorgyi-Krebs cycle

Reaction(s) found

9 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=TCA&oldid=24685"