Difference between revisions of "TCA"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11210 RXN-11210] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] ** [http://m...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11210 RXN-11210] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
−
* ec number:
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
−
** [http://enzyme.expasy.org/EC/3.5.1.6 EC-3.5.1.6]
+
* common name:
 +
** TCA cycle I (prokaryotic)
 
* Synonym(s):
 
* Synonym(s):
 +
** tricarboxylic acid cycle
 +
** citric acid cycle
 +
** Krebs cycle
 +
** Szent-Gyorgyi-Krebs cycle
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''9''' reactions found over '''10''' reactions in the full pathway
−
** 2 [[PROTON]][c] '''+''' 1 [[3-UREIDO-ISOBUTYRATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-471]][c]
+
* [[2OXOGLUTARATEDEH-RXN]]
−
* With common name(s):
+
** 3 associated gene(s):
−
** 2 H+[c] '''+''' 1 (R)-3-ureido-isobutanoate[c] '''+''' 1 H2O[c] '''=>''' 1 CO2[c] '''+''' 1 ammonium[c] '''+''' 1 (R)-3-amino-2-methylpropanoate[c]
+
*** [[Ec-21_002300]]
−
 
+
*** [[Ec-25_000020]]
−
== Genes associated with this reaction  ==
+
*** [[Ec-27_004160]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** 1 reconstruction source(s) associated:
−
* [[Ec-16_003010]]
+
*** [[annotation-esiliculosus_genome]]
−
** [[pantograph]]-[[aragem]]
+
* [[ACONITATEDEHYDR-RXN]]
−
== Pathways  ==
+
** 2 associated gene(s):
−
* [[PWY-6430]], thymine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6430 PWY-6430]
+
*** [[Ec-16_001000]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
*** [[Ec-12_000170]]
−
== Reconstruction information  ==
+
** 1 reconstruction source(s) associated:
−
* Category: [[orthology]]
+
*** [[annotation-esiliculosus_genome]]
−
** Source: [[orthology-aragem]]
+
* [[ACONITATEHYDR-RXN]]
−
*** Tool: [[pantograph]]
+
** 2 associated gene(s):
 +
*** [[Ec-16_001000]]
 +
*** [[Ec-12_000170]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[CITSYN-RXN]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[FUMHYDR-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Ec-25_001360]]
 +
*** [[Ec-23_003460]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[ISOCITDEH-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Ec-11_003080]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[MALATE-DEH-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Ec-10_006200]]
 +
*** [[Ec-02_003100]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[SUCCCOASYN-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Ec-10_000030]]
 +
*** [[Ec-02_001020]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
 +
** 6 associated gene(s):
 +
*** [[Ec-07_007310]]
 +
*** [[Ec-27_006560]]
 +
*** [[Ec-07_002870]]
 +
*** [[Ec-11_000360]]
 +
*** [[Ec-05_003640]]
 +
*** [[Ec-21_003470]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEHYDROGENASE-ACCEPTOR-RXN MALATE-DEHYDROGENASE-ACCEPTOR-RXN]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* ECOCYC:
−
{{#set: ec number=EC-3.5.1.6}}
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TCA TCA]
−
{{#set: gene associated=Ec-16_003010}}
+
* ARACYC:
−
{{#set: in pathway=PWY-6430}}
+
** [http://metacyc.org/ARA/NEW-IMAGE?object=TCA TCA]
−
{{#set: reconstruction category=orthology}}
+
{{#set: taxonomic range=TAX-2}}
−
{{#set: reconstruction source=orthology-aragem}}
+
{{#set: taxonomic range=TAX-2157}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: common name=TCA cycle I (prokaryotic)}}
 +
{{#set: common name=tricarboxylic acid cycle|citric acid cycle|Krebs cycle|Szent-Gyorgyi-Krebs cycle}}
 +
{{#set: reaction found=9}}
 +
{{#set: total reaction=10}}
 +
{{#set: completion rate=90.0}}

Latest revision as of 20:07, 21 March 2018

Pathway TCA

  • taxonomic range:
  • common name:
    • TCA cycle I (prokaryotic)
  • Synonym(s):
    • tricarboxylic acid cycle
    • citric acid cycle
    • Krebs cycle
    • Szent-Gyorgyi-Krebs cycle

Reaction(s) found

9 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=TCA&oldid=24685"