Difference between revisions of "GDPKIN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1501_METACYC18.5 RXN-1501_METACYC18.5] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == React...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPKIN-RXN GDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate ki...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1501_METACYC18.5 RXN-1501_METACYC18.5] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPKIN-RXN GDPKIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** nucleoside diphosphate kinase
 +
** Nucleoside diphosphate kinase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[PHOSPHATIDYLCHOLINE]][c] '''+''' 1.0 [[WATER]][c] '''=>''' 1.0 [[2-Lysophosphatidylcholines]][c] '''+''' 1.0 [[LINOLENIC_ACID]][c]
+
** 1 [[GDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[GTP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 a phosphatidylcholine[c] '''+''' 1.0 H2O[c] '''=>''' 1.0 a 1-acyl-sn-glycero-3-phosphocholine[c] '''+''' 1.0 α-linolenate[c]
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** 1 GDP[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 GTP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-04_004650]]
+
* Gene: [[Ec-11_005170]]
−
** 1_cycRxns_to_add
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-21_005150]]
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*** Assignment: GO-TERM
−
** 1_cycRxns_to_add
+
* Gene: [[Ec-03_001380]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-22_003280]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-11_004330]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-26_003930]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-07_000140]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-04_001140]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-1_cycrxns_to_add]]
+
** Source: [[orthology-aragem]]
−
*** Comment: [[reaction from metacyc 18.5 to produce linolenic_acid. reaction phospholipase-a2-rxn deleted in return because implies linolenic_acid compound class only]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27686 27686]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00330 R00330]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=Ec-04_004650|Ec-21_005150}}
+
{{#set: common name=nucleoside diphosphate kinase}}
−
{{#set: in pathway=}}
+
{{#set: common name=Nucleoside diphosphate kinase}}
−
{{#set: reconstruction category=manual}}
+
{{#set: ec number=EC-2.7.4.6}}
−
{{#set: reconstruction source=manual-1_cycrxns_to_add}}
+
{{#set: gene associated=Ec-11_005170|Ec-03_001380|Ec-22_003280|Ec-11_004330|Ec-26_003930|Ec-07_000140|Ec-04_001140}}
−
{{#set: reconstruction comment=reaction from metacyc 18.5 to produce linolenic_acid. reaction phospholipase-a2-rxn deleted in return because implies linolenic_acid compound class only}}
+
{{#set: in pathway=PWY-7221|PPGPPMET-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:08, 21 March 2018

Reaction GDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nucleoside diphosphate kinase
    • Nucleoside diphosphate kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 GDP[c] + 1 ATP[c] => 1 ADP[c] + 1 GTP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7221, guanosine ribonucleotides de novo biosynthesis: PWY-7221
    • 4 reactions found over 4 reactions in the full pathway
  • PPGPPMET-PWY, ppGpp biosynthesis: PPGPPMET-PWY
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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