Difference between revisions of "IPPISOM-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-168 RXN1F-168] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] == * direction: ** REVERSIBLE * common name: ** isopentenyl-diphosphate de...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-168 RXN1F-168] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** isopentenyl-diphosphate delta-isomerase type 1
 +
** isopentenyl-diphosphate delta-isomerase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.14.11.12 EC-1.14.11.12]
+
** [http://enzyme.expasy.org/EC/5.3.3.2 EC-5.3.3.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-10332]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[CPD1F-96]][c]
+
** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''+''' 1 gibberellin44 (open lactone form)[c] '''=>''' 1 H2O[c] '''+''' 1 CO2[c] '''+''' 1 succinate[c] '''+''' 1 gibberellin A19[c]
+
** 1 isopentenyl diphosphate[c] '''<=>''' 1 dimethylallyl diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-19_002750]]
+
* Gene: [[Ec-11_001030]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-19_002760]]
+
*** Assignment: GO-TERM
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-18_002690]]
−
* [[Ec-08_003510]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** [[pantograph]]-[[aragem]]
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5035]], gibberellin biosynthesis III (early C-13 hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5035 PWY-5035]
+
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-aragem]]
−
*** [[aragem]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16033 16033]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23284 23284]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07184 R07184]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: ec number=EC-1.14.11.12}}
+
** [http://www.uniprot.org/uniprot/P15496 P15496]
−
{{#set: gene associated=Ec-19_002750|Ec-19_002760|Ec-08_003510}}
+
** [http://www.uniprot.org/uniprot/Q10132 Q10132]
−
{{#set: in pathway=PWY-5035}}
+
** [http://www.uniprot.org/uniprot/Q38929 Q38929]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/Q42553 Q42553]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P93355 P93355]
−
{{#set: reconstruction source=aragem}}
+
** [http://www.uniprot.org/uniprot/O81691 O81691]
 +
** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0]
 +
** [http://www.uniprot.org/uniprot/O81660 O81660]
 +
** [http://www.uniprot.org/uniprot/O81659 O81659]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=isopentenyl-diphosphate delta-isomerase type 1}}
 +
{{#set: common name=isopentenyl-diphosphate delta-isomerase}}
 +
{{#set: ec number=EC-5.3.3.2}}
 +
{{#set: gene associated=Ec-11_001030|Ec-18_002690}}
 +
{{#set: in pathway=PWY-6174|PWY-6859|NONMEVIPP-PWY|PWY-7560|PWY-7391|PWY-5123|PWY-922|PWY-6383|PWY-7102|PWY-7524}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:09, 21 March 2018

Reaction IPPISOM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • isopentenyl-diphosphate delta-isomerase type 1
    • isopentenyl-diphosphate delta-isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] <=> 1 dimethylallyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6174, mevalonate pathway II (archaea): PWY-6174
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-922, mevalonate pathway I: PWY-922
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7524, mevalonate pathway III (archaea): PWY-7524
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=IPPISOM-RXN&oldid=24944"