Difference between revisions of "RXN-15829"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROPORIIIMETHYLTRANSA-RXN UROPORIIIMETHYLTRANSA-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] == * direction: ** LEFT-TO-RIGHT * common name: ** Cytochrome c1 ** ubiquinol...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROPORIIIMETHYLTRANSA-RXN UROPORIIIMETHYLTRANSA-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Tetrapyrrole methylase, subdomain 2
+
** Cytochrome c1
 +
** ubiquinol cytochrome c reductase subunit QCR9
 +
** Ubiquinol cytochrome reductase, transmembrane domain
 +
** Ubiquinol-cytochrome C reductase hinge domain
 +
** Cytochrome b-c1 complex subunit 7
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.10.2.2 EC-1.10.2.2]
 
* Synonym(s):
 
* Synonym(s):
−
** uroporphyrinogen methyltransferase
 
−
** uroporphyrinogen-III methyltransferase
 
−
** adenosylmethionine-uroporphyrinogen III methyltransferase
 
−
** S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase
 
−
** SirA
 
−
** CysG
 
−
** uroporphyrin-III C-methyltransferase (incorrect)
 
−
** S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase (incorrect)
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 1 [[CPD-9038]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
+
** 2 [[Reduced-CycA1-cytochromes]][e] '''+''' 1 [[Ubiquinones]][c] '''+''' 4 [[PROTON]][c] '''=>''' 2 [[Oxidized-CycA1-cytochromes]][e] '''+''' 1 [[Ubiquinols]][c] '''+''' 2 [[PROTON]][e]
 
* With common name(s):
 
* With common name(s):
−
** 1 S-adenosyl-L-methionine[c] '''+''' 1 uroporphyrinogen-III[c] '''=>''' 1 precorrin-1[c] '''+''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
+
** 2 a reduced CycA1 cytochrome[e] '''+''' 1 a ubiquinone[c] '''+''' 4 H+[c] '''=>''' 2 an oxidized CycA1 cytochrome[e] '''+''' 1 an ubiquinol[c] '''+''' 2 H+[e]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-06_004170]]
+
* Gene: [[Ec-18_002810]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-08_003040]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-25_001440]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-01_002540]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-21_004500]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7376 PWY-7376]
+
* [[PWY-6692]], Fe(II) oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6692 PWY-6692]
−
** '''2''' reactions found over '''13''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7377 PWY-7377]
+
−
** '''3''' reactions found over '''15''' reactions in the full pathway
+
−
* [[PWY-5194]], siroheme biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5194 PWY-5194]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-5196]], factor 430 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5196 PWY-5196]
+
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19089 19089]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R07237 R07237]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Tetrapyrrole methylase, subdomain 2}}
+
{{#set: common name=Cytochrome c1}}
−
{{#set: common name=uroporphyrinogen methyltransferase|uroporphyrinogen-III methyltransferase|adenosylmethionine-uroporphyrinogen III methyltransferase|S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase|SirA|CysG|uroporphyrin-III C-methyltransferase (incorrect)|S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase (incorrect)}}
+
{{#set: common name=ubiquinol cytochrome c reductase subunit QCR9}}
−
{{#set: gene associated=Ec-06_004170}}
+
{{#set: common name=Ubiquinol cytochrome reductase, transmembrane domain}}
−
{{#set: in pathway=PWY-7376|PWY-7377|PWY-5194|PWY-5196}}
+
{{#set: common name=Ubiquinol-cytochrome C reductase hinge domain}}
 +
{{#set: common name=Cytochrome b-c1 complex subunit 7}}
 +
{{#set: ec number=EC-1.10.2.2}}
 +
{{#set: gene associated=Ec-18_002810|Ec-08_003040|Ec-25_001440|Ec-01_002540|Ec-21_004500}}
 +
{{#set: in pathway=PWY-6692}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:09, 21 March 2018

Reaction RXN-15829

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Cytochrome c1
    • ubiquinol cytochrome c reductase subunit QCR9
    • Ubiquinol cytochrome reductase, transmembrane domain
    • Ubiquinol-cytochrome C reductase hinge domain
    • Cytochrome b-c1 complex subunit 7
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6692, Fe(II) oxidation: PWY-6692
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-15829&oldid=24979"