Difference between revisions of "Ec-05 000950"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.151-RXN 2.4.1.151-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** galactosyltransfera...")
 
(Created page with "Category:Gene == Gene Ec-05_000950 == * left end position: ** 2071506 * transcription direction: ** POSITIVE * right end position: ** 2084568 * centisome position: ** 22.7...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.151-RXN 2.4.1.151-RXN] ==
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== Gene Ec-05_000950 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 2071506
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* common name:
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* transcription direction:
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** galactosyltransferase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.4.1.87 EC-2.4.1.87]
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** 2084568
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* centisome position:
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** 22.755041   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0169_0029
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** Esi0169_0029
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[5-NUCLEOTID-RXN]]
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** 1 [[B-Gal-14-NacGlc-R]][c] '''+''' 1 [[CPD-14553]][c] '''=>''' 1 [[ALPHA-D-GALACTOSYL-ETCETERA-GLUCOSAMINYL]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 β-D-galactosyl-(1→4)-N-acetyl-β-D-glucosaminyl-R[c] '''+''' 1 UDP-α-D-galactose[c] '''=>''' 1 α-D-galactosyl-(1,3)-β-D-galactosyl-(1,4)-N-acetyl-D-glucosaminyl-R[c] '''+''' 1 H+[c] '''+''' 1 UDP[c]
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* Reaction: [[AMP-DEPHOSPHORYLATION-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-14025]]
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* [[Ec-01_006680]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: automated-name-match
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***GO-TERM
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* Reaction: [[RXN-14026]]
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* [[Ec-14_005280]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: automated-name-match
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***GO-TERM
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* Reaction: [[RXN-14227]]
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* [[Ec-00_004510]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: automated-name-match
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***GO-TERM
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* Reaction: [[RXN-5841]]
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* [[Ec-24_000030]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: automated-name-match
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***GO-TERM
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* Reaction: [[RXN-7607]]
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* [[Ec-08_004370]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: automated-name-match
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***GO-TERM
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* Reaction: [[RXN-7609]]
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* [[Ec-03_002280]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: automated-name-match
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***GO-TERM
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* Reaction: [[XMPXAN-RXN]]
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* [[Ec-26_000190]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: automated-name-match
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***GO-TERM
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== Pathways associated ==
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== Pathways ==
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* [[PWY-5381]]
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* [[PWY-7434]], terminal O-glycans residues modification: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7434 PWY-7434]
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* [[PWY-6607]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7185]]
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== Reconstruction information  ==
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* [[SALVADEHYPOX-PWY]]
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* [[annotation]]:
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* [[PWY-6596]]
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** [[pathwaytools]]:
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* [[NAD-BIOSYNTHESIS-II]]
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*** [[esiliculosus_genome]]
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* [[PWY-6606]]
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* [[PWY-6608]]
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* [[PWY-5695]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2071506}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13013 13013]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2084568}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02791 R02791]
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{{#set: centisome position=22.755041    }}
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* UNIPROT:
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{{#set: common name=Esi_0169_0029|Esi0169_0029}}
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** [http://www.uniprot.org/uniprot/Q28855 Q28855]
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{{#set: reaction associated=5-NUCLEOTID-RXN|AMP-DEPHOSPHORYLATION-RXN|RXN-14025|RXN-14026|RXN-14227|RXN-5841|RXN-7607|RXN-7609|XMPXAN-RXN}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-5381|PWY-6607|PWY-7185|SALVADEHYPOX-PWY|PWY-6596|NAD-BIOSYNTHESIS-II|PWY-6606|PWY-6608|PWY-5695}}
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{{#set: common name=galactosyltransferase}}
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{{#set: ec number=EC-2.4.1.87}}
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{{#set: gene associated=Ec-01_006680|Ec-14_005280|Ec-00_004510|Ec-24_000030|Ec-08_004370|Ec-03_002280|Ec-26_000190}}
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{{#set: in pathway=PWY-7434}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 20:10, 21 March 2018

Gene Ec-05_000950

  • left end position:
    • 2071506
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2084568
  • centisome position:
    • 22.755041
  • Synonym(s):
    • Esi_0169_0029
    • Esi0169_0029

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-05_000950&oldid=24984"