Difference between revisions of "3-OXOACYL-ACP-SYNTH-BASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15152 CPD-15152] == * smiles: ** CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15152 CPD-15152] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] ==
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* smiles:
+
* direction:
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** CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCC1(C(=O)C(OC)=CC(=O)C=1)
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** LEFT-TO-RIGHT
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* inchi key:
+
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** InChIKey=AFTBILPWMUSGIN-MYCGWMCTSA-N
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* common name:
 
* common name:
−
** 6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone
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** Beta-ketoacyl synthase, N-terminal
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* molecular weight:
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** Thiolase-like, subgroup
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** 683.068   
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** beta-ketoacyl synthase, partial
 +
** 3-oxoacyl-[acyl-carrier-protein] synthase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-14177]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PROTON]][c] '''+''' 1 [[ACETYL-ACP]][c] '''+''' 1 [[MALONYL-ACP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[ACP]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
 +
** 1 H+[c] '''+''' 1 an acetyl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''=>''' 1 CO2[c] '''+''' 1 an acetoacetyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-27_002090]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-12_000650]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-27_003480]]
 +
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-12_000640]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-5965]], fatty acid biosynthesis initiation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5965 PWY-5965]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5966]], fatty acid biosynthesis initiation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5966 PWY-5966]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=FASYN-INITIAL-PWY FASYN-INITIAL-PWY]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-CPD:
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* UNIPROT:
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** [http://www.genome.jp/dbget-bin/www_bget?C05813 C05813]
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** [http://www.uniprot.org/uniprot/P23902 P23902]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=28423 28423]
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/P43710 P43710]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5280835 5280835]
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** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
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{{#set: smiles=CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCC1(C(=O)C(OC)=CC(=O)C=1)}}
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** [http://www.uniprot.org/uniprot/O67612 O67612]
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{{#set: inchi key=InChIKey=AFTBILPWMUSGIN-MYCGWMCTSA-N}}
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** [http://www.uniprot.org/uniprot/P20582 P20582]
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{{#set: common name=6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone}}
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** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
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{{#set: molecular weight=683.068    }}
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** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
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{{#set: consumed by=RXN-14177}}
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** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
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** [http://www.uniprot.org/uniprot/P43711 P43711]
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** [http://www.uniprot.org/uniprot/O25284 O25284]
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** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
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** [http://www.uniprot.org/uniprot/O34340 O34340]
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** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
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** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
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** [http://www.uniprot.org/uniprot/Q07510 Q07510]
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** [http://www.uniprot.org/uniprot/Q06097 Q06097]
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** [http://www.uniprot.org/uniprot/P41175 P41175]
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** [http://www.uniprot.org/uniprot/P31176 P31176]
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** [http://www.uniprot.org/uniprot/Q40027 Q40027]
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** [http://www.uniprot.org/uniprot/Q40028 Q40028]
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** [http://www.uniprot.org/uniprot/P73283 P73283]
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** [http://www.uniprot.org/uniprot/P0A953 P0A953]
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** [http://www.uniprot.org/uniprot/O64485 O64485]
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** [http://www.uniprot.org/uniprot/O65677 O65677]
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** [http://www.uniprot.org/uniprot/Q39310 Q39310]
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** [http://www.uniprot.org/uniprot/O23738 O23738]
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** [http://www.uniprot.org/uniprot/Q41134 Q41134]
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** [http://www.uniprot.org/uniprot/Q41135 Q41135]
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** [http://www.uniprot.org/uniprot/Q54208 Q54208]
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** [http://www.uniprot.org/uniprot/O54440 O54440]
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** [http://www.uniprot.org/uniprot/P55338 P55338]
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** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
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** [http://www.uniprot.org/uniprot/P12276 P12276]
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** [http://www.uniprot.org/uniprot/P12785 P12785]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Beta-ketoacyl synthase, N-terminal}}
 +
{{#set: common name=Thiolase-like, subgroup}}
 +
{{#set: common name=beta-ketoacyl synthase, partial}}
 +
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase}}
 +
{{#set: ec number=EC-2.3.1.86}}
 +
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-2.3.1.41}}
 +
{{#set: gene associated=Ec-27_002090|Ec-12_000650|Ec-27_003480|Ec-12_000640}}
 +
{{#set: in pathway=PWY-5965|PWY-5966|FASYN-INITIAL-PWY|PWY-7388}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:11, 21 March 2018

Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Beta-ketoacyl synthase, N-terminal
    • Thiolase-like, subgroup
    • beta-ketoacyl synthase, partial
    • 3-oxoacyl-[acyl-carrier-protein] synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5965, fatty acid biosynthesis initiation III: PWY-5965
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5966, fatty acid biosynthesis initiation II: PWY-5966
    • 2 reactions found over 2 reactions in the full pathway
  • FASYN-INITIAL-PWY, superpathway of fatty acid biosynthesis initiation (E. coli): FASYN-INITIAL-PWY
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): PWY-7388
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links



"3-oxoacyl-[acyl-carrier-protein] synthase" cannot be used as a page name in this wiki.





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