Difference between revisions of "PWY-6545"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] == * direction: ** LEFT-TO-RIGHT * common name: ** Cytochrome c1 ** ubiquinol...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5782 TAX-57...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5782 TAX-5782]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-10239 TAX-10239]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
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** Cytochrome c1
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** pyrimidine deoxyribonucleotides de novo biosynthesis III
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** ubiquinol cytochrome c reductase subunit QCR9
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** Ubiquinol cytochrome reductase, transmembrane domain
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−
** Ubiquinol-cytochrome C reductase hinge domain
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** Cytochrome b-c1 complex subunit 7
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* ec number:
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** [http://enzyme.expasy.org/EC/1.10.2.2 EC-1.10.2.2]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''9''' reactions in the full pathway
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** 2 [[Reduced-CycA1-cytochromes]][e] '''+''' 1 [[Ubiquinones]][c] '''+''' 4 [[PROTON]][c] '''=>''' 2 [[Oxidized-CycA1-cytochromes]][e] '''+''' 1 [[Ubiquinols]][c] '''+''' 2 [[PROTON]][e]
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* [[CDPREDUCT-RXN]]
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* With common name(s):
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** 7 associated gene(s):
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** 2 a reduced CycA1 cytochrome[e] '''+''' 1 a ubiquinone[c] '''+''' 4 H+[c] '''=>''' 2 an oxidized CycA1 cytochrome[e] '''+''' 1 an ubiquinol[c] '''+''' 2 H+[e]
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*** [[Ec-19_000440]]
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*** [[Ec-06_005120]]
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== Genes associated with this reaction  ==
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*** [[Ec-06_005570]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Ec-21_002920]]
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* Gene: [[Ec-18_002810]]
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*** [[Ec-17_003700]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-11_002170]]
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*** Assignment: EC-NUMBER
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*** [[Ec-11_002180]]
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* Gene: [[Ec-08_003040]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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*** [[orthology-aragem]]
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* Gene: [[Ec-25_001440]]
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* [[DCDPKIN-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 7 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Ec-03_001380]]
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* Gene: [[Ec-01_002540]]
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*** [[Ec-11_005170]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-26_003930]]
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*** Assignment: EC-NUMBER
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*** [[Ec-22_003280]]
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* Gene: [[Ec-21_004500]]
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*** [[Ec-07_000140]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-04_001140]]
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*** Assignment: EC-NUMBER
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*** [[Ec-11_004330]]
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== Pathways  ==
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** 2 reconstruction source(s) associated:
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* [[PWY-6692]], Fe(II) oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6692 PWY-6692]
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*** [[annotation-esiliculosus_genome]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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*** [[orthology-aragem]]
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== Reconstruction information  ==
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* [[DTDPKIN-RXN]]
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* Category: [[annotation]]
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** 7 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-26_003930]]
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*** Tool: [[pathwaytools]]
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*** [[Ec-07_000140]]
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*** [[Ec-03_001380]]
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*** [[Ec-22_003280]]
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*** [[Ec-04_001140]]
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*** [[Ec-11_004330]]
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*** [[Ec-11_005170]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[DTMPKI-RXN]]
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** 1 associated gene(s):
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*** [[Ec-20_004950]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[DUDPKIN-RXN]]
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** 7 associated gene(s):
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*** [[Ec-22_003280]]
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*** [[Ec-04_001140]]
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*** [[Ec-07_000140]]
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*** [[Ec-26_003930]]
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*** [[Ec-03_001380]]
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*** [[Ec-11_005170]]
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*** [[Ec-11_004330]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[DUTP-PYROP-RXN]]
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** 1 associated gene(s):
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*** [[Ec-13_002810]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RXN-12195]]
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** 9 associated gene(s):
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*** [[Ec-05_005340]]
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*** [[Ec-03_004860]]
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*** [[Ec-02_005730]]
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*** [[Ec-17_000870]]
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*** [[Ec-18_004660]]
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*** [[Ec-28_000420]]
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*** [[Ec-03_001180]]
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*** [[Ec-01_003690]]
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*** [[Ec-06_005470]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[UDPREDUCT-RXN]]
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** 7 associated gene(s):
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*** [[Ec-06_005120]]
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*** [[Ec-21_002920]]
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*** [[Ec-06_005570]]
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*** [[Ec-11_002180]]
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*** [[Ec-17_003700]]
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*** [[Ec-11_002170]]
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*** [[Ec-19_000440]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8850 RXN-8850]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-MAP:
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{{#set: common name=Cytochrome c1}}
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** [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
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{{#set: common name=ubiquinol cytochrome c reductase subunit QCR9}}
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{{#set: taxonomic range=TAX-5782}}
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{{#set: common name=Ubiquinol cytochrome reductase, transmembrane domain}}
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{{#set: taxonomic range=TAX-10239}}
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{{#set: common name=Ubiquinol-cytochrome C reductase hinge domain}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=Cytochrome b-c1 complex subunit 7}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: ec number=EC-1.10.2.2}}
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{{#set: common name=pyrimidine deoxyribonucleotides de novo biosynthesis III}}
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{{#set: gene associated=Ec-18_002810|Ec-08_003040|Ec-25_001440|Ec-01_002540|Ec-21_004500}}
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{{#set: reaction found=8}}
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{{#set: in pathway=PWY-6692}}
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{{#set: total reaction=9}}
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{{#set: reconstruction category=annotation}}
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{{#set: completion rate=89.0}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:11, 21 March 2018

Pathway PWY-6545

Reaction(s) found

8 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-6545&oldid=25131"