Difference between revisions of "PWY-241"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
 
* common name:
 
* common name:
−
** Beta-ketoacyl synthase, N-terminal
+
** C4 photosynthetic carbon assimilation cycle, NADP-ME type
−
** Thiolase-like, subgroup
+
−
** beta-ketoacyl synthase, partial
+
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** PCA cycle
 +
** C4 photosynthesis, NADP-ME type
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''4''' reactions found over '''5''' reactions in the full pathway
−
** 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ACETYL-ACP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[ACP]][c]
+
* [[MALIC-NADP-RXN]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 an acetyl-[acp][c] '''=>''' 1 CO2[c] '''+''' 1 an acetoacetyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
+
*** [[Ec-01_003680]]
−
 
+
** 2 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[annotation-esiliculosus_genome]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-aragem]]
−
* [[Ec-12_000650]]
+
* [[PEPCARBOX-RXN]]
−
** ESILICULOSUS_GENOME
+
** 1 associated gene(s):
−
***GO-TERM
+
*** [[Ec-28_003470]]
−
** [[pantograph]]-[[aragem]]
+
** 1 reconstruction source(s) associated:
−
** [[pantograph]]-[[aragem]]
+
*** [[annotation-esiliculosus_genome]]
−
* [[Ec-27_003480]]
+
* [[PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN]]
−
** ESILICULOSUS_GENOME
+
** 1 associated gene(s):
−
***EC-NUMBER
+
*** [[Ec-18_001310]]
−
* [[Ec-27_002090]]
+
** 2 reconstruction source(s) associated:
−
** ESILICULOSUS_GENOME
+
*** [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** [[orthology-aragem]]
−
** [[pantograph]]-[[aragem]]
+
* [[RXN0-5224]]
−
** [[pantograph]]-[[aragem]]
+
** 8 associated gene(s):
−
* [[Ec-12_000640]]
+
*** [[Ec-03_001960]]
−
** ESILICULOSUS_GENOME
+
*** [[Ec-10_002770]]
−
***EC-NUMBER
+
*** [[Ec-06_004120]]
−
== Pathways  ==
+
*** [[Ec-05_001290]]
−
* [[PWY-5965]], fatty acid biosynthesis initiation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5965 PWY-5965]
+
*** [[Ec-27_005680]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
*** [[Ec-07_004610]]
−
* [[PWY-5966]], fatty acid biosynthesis initiation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5966 PWY-5966]
+
*** [[Ec-22_001150]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
*** [[Ec-16_004700]]
−
* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=FASYN-INITIAL-PWY FASYN-INITIAL-PWY]
+
** 1 reconstruction source(s) associated:
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
*** [[annotation-esiliculosus_genome]]
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
+
== Reaction(s) not found ==
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEHYDROGENASE-NADP+-RXN MALATE-DEHYDROGENASE-NADP+-RXN]
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[aragem]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
{{#set: taxonomic range=TAX-3193}}
−
** [http://www.uniprot.org/uniprot/P23902 P23902]
+
{{#set: common name=C4 photosynthetic carbon assimilation cycle, NADP-ME type}}
−
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
+
{{#set: common name=PCA cycle|C4 photosynthesis, NADP-ME type}}
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
+
{{#set: reaction found=4}}
−
** [http://www.uniprot.org/uniprot/P43710 P43710]
+
{{#set: total reaction=5}}
−
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
+
{{#set: completion rate=80.0}}
−
** [http://www.uniprot.org/uniprot/O67612 O67612]
+
−
** [http://www.uniprot.org/uniprot/P20582 P20582]
+
−
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
+
−
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
+
−
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
+
−
** [http://www.uniprot.org/uniprot/P43711 P43711]
+
−
** [http://www.uniprot.org/uniprot/O25284 O25284]
+
−
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
+
−
** [http://www.uniprot.org/uniprot/O34340 O34340]
+
−
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
+
−
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
+
−
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
+
−
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
+
−
** [http://www.uniprot.org/uniprot/P41175 P41175]
+
−
** [http://www.uniprot.org/uniprot/P31176 P31176]
+
−
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
+
−
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
+
−
** [http://www.uniprot.org/uniprot/P73283 P73283]
+
−
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
+
−
** [http://www.uniprot.org/uniprot/O64485 O64485]
+
−
** [http://www.uniprot.org/uniprot/O65677 O65677]
+
−
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
+
−
** [http://www.uniprot.org/uniprot/O23738 O23738]
+
−
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
+
−
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
+
−
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
+
−
** [http://www.uniprot.org/uniprot/O54440 O54440]
+
−
** [http://www.uniprot.org/uniprot/P55338 P55338]
+
−
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
+
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
+
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=Beta-ketoacyl synthase, N-terminal}}
+
−
{{#set: common name=Thiolase-like, subgroup}}
+
−
{{#set: common name=beta-ketoacyl synthase, partial}}
+
−
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase}}
+
−
{{#set: ec number=EC-2.3.1.86}}
+
−
{{#set: ec number=EC-2.3.1.85}}
+
−
{{#set: ec number=EC-2.3.1.41}}
+
−
{{#set: gene associated=Ec-12_000650|Ec-27_003480|Ec-27_002090|Ec-12_000640}}
+
−
{{#set: in pathway=PWY-5965|PWY-5966|FASYN-INITIAL-PWY|PWY-7388}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=esiliculosus_genome}}
+

Latest revision as of 19:11, 21 March 2018

Pathway PWY-241

  • taxonomic range:
  • common name:
    • C4 photosynthetic carbon assimilation cycle, NADP-ME type
  • Synonym(s):
    • PCA cycle
    • C4 photosynthesis, NADP-ME type

Reaction(s) found

4 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-241&oldid=25135"