Difference between revisions of "Ec-03 001380"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy....")
(Created page with "Category:Gene == Gene Ec-03_001380 == * left end position: ** 1612953 * transcription direction: ** NEGATIVE * right end position: ** 1622108 * centisome position: ** 24.7...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] ==
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== Gene Ec-03_001380 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 1612953
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.2.1.1 EC-2.2.1.1]
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** NEGATIVE
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* right end position:
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** 1622108
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* centisome position:
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** 24.705725   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0224_0046
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** Esi0224_0046
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[CDPKIN-RXN]]
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** 1 [[XYLULOSE-5-PHOSPHATE]][c] '''+''' 1 [[ERYTHROSE-4P]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[FRUCTOSE-6P]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 1 D-xylulose 5-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c] '''<=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 &beta;-D-fructofuranose 6-phosphate[c]
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* Reaction: [[DADPKIN-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: go-term
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[DCDPKIN-RXN]]
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* [[Ec-20_002600]]
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** Source: [[annotation-esiliculosus_genome]]
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** [[pantograph]]-[[aragem]]
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*** Assignment: go-term
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** [[pantograph]]-[[aragem]]
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* Reaction: [[DGDPKIN-RXN]]
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== Pathways  ==
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
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*** Assignment: go-term
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** '''9''' reactions found over '''12''' reactions in the full pathway
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* Reaction: [[DTDPKIN-RXN]]
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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** Source: [[annotation-esiliculosus_genome]]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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*** Assignment: go-term
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* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
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* Reaction: [[DUDPKIN-RXN]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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*** Assignment: go-term
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* Reaction: [[GDPKIN-RXN]]
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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** Source: [[annotation-esiliculosus_genome]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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*** Assignment: go-term
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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* Reaction: [[NUCLEOSIDE-DIP-KIN-RXN]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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** Source: [[annotation-esiliculosus_genome]]
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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*** Assignment: go-term
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* Reaction: [[RXN-14120]]
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== Reconstruction information  ==
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** Source: [[annotation-esiliculosus_genome]]
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* Category: [[orthology]]
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*** Assignment: go-term
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** Source: [[orthology-aragem]]
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* Reaction: [[RXN-14228]]
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*** Tool: [[pantograph]]
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** Source: [[annotation-esiliculosus_genome]]
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* Category: [[annotation]]
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*** Assignment: go-term
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* Reaction: [[UDPKIN-RXN]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY-7210]]
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* [[PWY-7198]]
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* [[PWY-7176]]
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* [[PWY-7220]]
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* [[PWY-7184]]
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* [[PWY-7222]]
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* [[PWY-7205]]
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* [[PWY-7224]]
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* [[PWY-7197]]
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* [[PWY0-166]]
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* [[PWY-7227]]
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* [[PPGPPMET-PWY]]
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* [[PWY-7226]]
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* [[PWY-7221]]
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* [[PWY-6545]]
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* [[PWY-7187]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=1612953}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27626 27626]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=1622108}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
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{{#set: centisome position=24.705725    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01067 R01067]
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{{#set: common name=Esi_0224_0046|Esi0224_0046}}
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* UNIPROT:
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{{#set: reaction associated=CDPKIN-RXN|DADPKIN-RXN|DCDPKIN-RXN|DGDPKIN-RXN|DTDPKIN-RXN|DUDPKIN-RXN|GDPKIN-RXN|NUCLEOSIDE-DIP-KIN-RXN|RXN-14120|RXN-14228|UDPKIN-RXN}}
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** [http://www.uniprot.org/uniprot/P22976 P22976]
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{{#set: pathway associated=PWY-7210|PWY-7198|PWY-7176|PWY-7220|PWY-7184|PWY-7222|PWY-7205|PWY-7224|PWY-7197|PWY0-166|PWY-7227|PPGPPMET-PWY|PWY-7226|PWY-7221|PWY-6545|PWY-7187}}
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** [http://www.uniprot.org/uniprot/P29401 P29401]
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** [http://www.uniprot.org/uniprot/P33570 P33570]
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** [http://www.uniprot.org/uniprot/P21725 P21725]
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** [http://www.uniprot.org/uniprot/Q58094 Q58094]
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** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
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** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
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** [http://www.uniprot.org/uniprot/P21726 P21726]
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** [http://www.uniprot.org/uniprot/P47312 P47312]
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** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
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** [http://www.uniprot.org/uniprot/P43757 P43757]
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** [http://www.uniprot.org/uniprot/Q58092 Q58092]
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** [http://www.uniprot.org/uniprot/P45694 P45694]
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** [http://www.uniprot.org/uniprot/Q52723 Q52723]
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** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
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** [http://www.uniprot.org/uniprot/P34736 P34736]
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** [http://www.uniprot.org/uniprot/P33315 P33315]
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** [http://www.uniprot.org/uniprot/Q42675 Q42675]
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** [http://www.uniprot.org/uniprot/Q42676 Q42676]
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** [http://www.uniprot.org/uniprot/Q42677 Q42677]
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** [http://www.uniprot.org/uniprot/P46708 P46708]
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** [http://www.uniprot.org/uniprot/P75611 P75611]
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** [http://www.uniprot.org/uniprot/P73282 P73282]
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** [http://www.uniprot.org/uniprot/Q49047 Q49047]
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** [http://www.uniprot.org/uniprot/O20250 O20250]
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** [http://www.uniprot.org/uniprot/O78327 O78327]
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** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
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** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
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** [http://www.uniprot.org/uniprot/P23254 P23254]
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** [http://www.uniprot.org/uniprot/P27302 P27302]
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** [http://www.uniprot.org/uniprot/P29277 P29277]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-2.2.1.1}}
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{{#set: gene associated=Ec-20_002600}}
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{{#set: in pathway=PWY-6901|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:12, 21 March 2018

Gene Ec-03_001380

  • left end position:
    • 1612953
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 1622108
  • centisome position:
    • 24.705725
  • Synonym(s):
    • Esi_0224_0046
    • Esi0224_0046

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-03_001380&oldid=25335"