Difference between revisions of "R223-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** octanoyl-CoA ligase ** long c...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** sucrose biosynthesis II
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** octanoyl-CoA ligase
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** long chain acyl-coA synthetase
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** long chain acyl-CoA synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** sucrose biosynthesis II (from starch degradation intermediates)
 
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** sucrose biosynthesis II (plant cytosol)
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''8''' reactions in the full pathway
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* With identifiers:
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* [[GLUC1PURIDYLTRANS-RXN]]
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** 1 [[CPD-195]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-196]][c] '''+''' 1 [[PPI]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Ec-05_002180]]
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** 1 octanoate[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 AMP[c] '''+''' 1 octanoyl-CoA[c] '''+''' 1 diphosphate[c]
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*** [[Ec-12_002300]]
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*** [[Ec-03_002030]]
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== Genes associated with this reaction  ==
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*** [[Ec-16_004100]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
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* Gene: [[Ec-02_006430]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[GLUCOKIN-RXN]]
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* Gene: [[Ec-12_008720]]
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** 1 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-27_005030]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 1 reconstruction source(s) associated:
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* Gene: [[Ec-03_003710]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PGLUCISOM-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 3 associated gene(s):
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* Gene: [[Ec-01_001560]]
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*** [[Ec-24_002470]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-13_003530]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-13_003810]]
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== Pathways  ==
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** 1 reconstruction source(s) associated:
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* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
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*** [[annotation-esiliculosus_genome]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PHOSPHOGLUCMUT-RXN]]
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* [[P221-PWY]], octane oxidation: [http://metacyc.org/META/NEW-IMAGE?object=P221-PWY P221-PWY]
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** 1 associated gene(s):
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** '''2''' reactions found over '''5''' reactions in the full pathway
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*** [[Ec-17_001480]]
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* Category: [[annotation]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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*** Tool: [[pathwaytools]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14353 RXN-14353]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14354 RXN-14354]
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCROSE-PHOSPHATASE-RXN SUCROSE-PHOSPHATASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCROSE-PHOSPHATE-SYNTHASE-RXN SUCROSE-PHOSPHATE-SYNTHASE-RXN]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33090}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=sucrose biosynthesis II}}
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{{#set: common name=octanoyl-CoA ligase}}
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{{#set: common name=sucrose biosynthesis II (from starch degradation intermediates)|sucrose biosynthesis II (plant cytosol)}}
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{{#set: common name=long chain acyl-coA synthetase}}
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{{#set: reaction found=4}}
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{{#set: common name=long chain acyl-CoA synthetase}}
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{{#set: total reaction=8}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: completion rate=50.0}}
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{{#set: gene associated=Ec-02_006430|Ec-12_008720|Ec-03_003710|Ec-01_001560}}
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{{#set: in pathway=PWY-6920|P221-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:12, 21 March 2018

Reaction R223-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • octanoyl-CoA ligase
    • long chain acyl-coA synthetase
    • long chain acyl-CoA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 octanoate[c] + 1 ATP[c] + 1 coenzyme A[c] => 1 AMP[c] + 1 octanoyl-CoA[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6920, 6-gingerol analog biosynthesis (engineered): PWY-6920
    • 3 reactions found over 6 reactions in the full pathway
  • P221-PWY, octane oxidation: P221-PWY
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=R223-RXN&oldid=25336"