Difference between revisions of "DIAMINOPIMEPIM-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDPGALDOL-RXN KDPGALDOL-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** KDPG/KHG aldolase *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMEPIM-RXN DIAMINOPIMEPIM-RXN] == * direction: ** REVERSIBLE * common name: ** Diaminopimel...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDPGALDOL-RXN KDPGALDOL-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMEPIM-RXN DIAMINOPIMEPIM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** KDPG/KHG aldolase
+
** Diaminopimelate epimerase, DapF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.2.55 EC-4.1.2.55]
+
** [http://enzyme.expasy.org/EC/5.1.1.7 EC-5.1.1.7]
−
** [http://enzyme.expasy.org/EC/4.1.2.14 EC-4.1.2.14]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[GAP]][c]
+
** 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[MESO-DIAMINOPIMELATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-dehydro-3-deoxy-D-gluconate 6-phosphate[c] '''=>''' 1 pyruvate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
+
** 1 L,L-diaminopimelate[c] '''<=>''' 1 meso-diaminopimelate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-27_004070]]
+
* Gene: [[Ec-06_009100]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
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*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
+
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7310]], D-glucosaminate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7310 PWY-7310]
+
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6507 PWY-6507]
+
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[GALACTUROCAT-PWY]], D-galacturonate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GALACTUROCAT-PWY GALACTUROCAT-PWY]
+
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
−
* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff pathway I: [http://metacyc.org/META/NEW-IMAGE?object=ENTNER-DOUDOROFF-PWY ENTNER-DOUDOROFF-PWY]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7562]], 3,6-anhydro-&alpha;-L-galactopyranose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7562 PWY-7562]
+
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-7242]], D-fructuronate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7242 PWY-7242]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17089 17089]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15393 15393]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02735 R02735]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P44480 P44480]
+
** [http://www.uniprot.org/uniprot/Q9PMD8 Q9PMD8]
−
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
+
** [http://www.uniprot.org/uniprot/Q9JV69 Q9JV69]
−
** [http://www.uniprot.org/uniprot/P00885 P00885]
+
** [http://www.uniprot.org/uniprot/P44859 P44859]
−
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
+
** [http://www.uniprot.org/uniprot/Q58519 Q58519]
−
** [http://www.uniprot.org/uniprot/O25729 O25729]
+
** [http://www.uniprot.org/uniprot/P0A6K1 P0A6K1]
−
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
+
** [http://www.uniprot.org/uniprot/Q51564 Q51564]
−
** [http://www.uniprot.org/uniprot/O83578 O83578]
+
** [http://www.uniprot.org/uniprot/P46814 P46814]
−
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
+
** [http://www.uniprot.org/uniprot/O05322 O05322]
−
** [http://www.uniprot.org/uniprot/P50846 P50846]
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P38448 P38448]
+
{{#set: common name=Diaminopimelate epimerase, DapF}}
−
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
+
{{#set: ec number=EC-5.1.1.7}}
−
** [http://www.uniprot.org/uniprot/P94802 P94802]
+
{{#set: gene associated=Ec-06_009100}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: in pathway=PWY-5097|DAPLYSINESYN-PWY|PWY-2941}}
−
{{#set: common name=KDPG/KHG aldolase}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: ec number=EC-4.1.2.55}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
−
{{#set: ec number=EC-4.1.2.14}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: gene associated=Ec-27_004070}}
+
−
{{#set: in pathway=PWY-2221|PWY-7310|PWY-6507|GALACTUROCAT-PWY|ENTNER-DOUDOROFF-PWY|PWY-7562|PWY-7242}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 20:13, 21 March 2018

Reaction DIAMINOPIMEPIM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Diaminopimelate epimerase, DapF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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