Difference between revisions of "PWY-6824"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** tRNA-splicing endonuc...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6824 PWY-6824] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6824 PWY-6824] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** tRNA-splicing endonuclease subunit Sen15
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** justicidin B biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/4.6.1.16 EC-4.6.1.16]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''6''' reactions in the full pathway
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** 1 [[CPD0-2350]][c] '''=>''' 1 [[tRNA-Introns]][c] '''+''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c]
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* [[RXN-17352]]
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* With common name(s):
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** 30 associated gene(s):
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** 1 a polycistronic tRNA precursor[c] '''=>''' 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c] '''+''' 1 a 3' half-tRNA molecule with a hydroxyl on its 5' end[c] '''+''' 1 a 5' half-tRNA molecule with a 2',3' cyclic phosphate on its 3' end[c]
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*** [[Ec-24_002370]]
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*** [[Ec-00_008250]]
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== Genes associated with this reaction  ==
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*** [[Ec-02_001740]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Ec-17_002450]]
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* Gene: [[Ec-21_006500]]
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*** [[Ec-00_008210]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-17_002430]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-02_003170]]
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== Pathways  ==
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*** [[Ec-19_000230]]
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* [[PWY-6689]], tRNA splicing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6689 PWY-6689]
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*** [[Ec-24_002030]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[Ec-19_001450]]
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== Reconstruction information  ==
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*** [[Ec-14_002880]]
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* Category: [[annotation]]
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*** [[Ec-14_006530]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-02_001880]]
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*** Tool: [[pathwaytools]]
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*** [[Ec-02_000470]]
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*** [[Ec-05_003380]]
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*** [[Ec-28_003740]]
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*** [[Ec-20_002770]]
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*** [[Ec-00_008240]]
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*** [[Ec-00_008220]]
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*** [[Ec-08_006020]]
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*** [[Ec-11_003410]]
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*** [[Ec-11_001530]]
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*** [[Ec-02_001210]]
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*** [[Ec-06_003550]]
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*** [[Ec-27_004950]]
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*** [[Ec-26_000310]]
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*** [[Ec-00_010030]]
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*** [[Ec-05_002520]]
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*** [[Ec-16_000240]]
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*** [[Ec-04_004690]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12451 RXN-12451]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12591 RXN-12591]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17351 RXN-17351]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8677 RXN-8677]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8684 RXN-8684]
 
== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.uniprot.org/uniprot/O07118 O07118]
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{{#set: common name=justicidin B biosynthesis}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=1}}
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{{#set: common name=tRNA-splicing endonuclease subunit Sen15}}
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{{#set: total reaction=6}}
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{{#set: ec number=EC-4.6.1.16}}
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{{#set: completion rate=17.0}}
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{{#set: gene associated=Ec-21_006500}}
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{{#set: in pathway=PWY-6689}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:15, 21 March 2018

Pathway PWY-6824

  • taxonomic range:
  • common name:
    • justicidin B biosynthesis
  • Synonym(s):

Reaction(s) found

1 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-6824&oldid=25642"