Difference between revisions of "Ec-14 004920"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13162 RXN-13162] == * direction: ** LEFT-TO-RIGHT * common name: ** Isopentenyl-diphosphate del...")
(Created page with "Category:Gene == Gene Ec-14_004920 == * left end position: ** 4561360 * transcription direction: ** POSITIVE * right end position: ** 4565982 * centisome position: ** 69.5...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13162 RXN-13162] ==
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== Gene Ec-14_004920 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 4561360
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* common name:
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* transcription direction:
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** Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.5.1.21 EC-2.5.1.21]
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** 4565982
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* centisome position:
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** 69.52839   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0189_0070
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** Esi0189_0070
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ADENYL-KIN-RXN]]
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** 2 [[FARNESYL-PP]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[SQUALENE]][c] '''+''' 2 [[PPI]][c] '''+''' 1 [[NAD-P-OR-NOP]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 2 (2E,6E)-farnesyl diphosphate[c] '''+''' 1 NAD(P)H[c] '''+''' 1 H+[c] '''=>''' 1 squalene[c] '''+''' 2 diphosphate[c] '''+''' 1 NAD(P)+[c]
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* Reaction: [[RXN-11832]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12002]]
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* Gene: [[Ec-11_001030]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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== Pathways  ==
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* Reaction: [[RXN-7913]]
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* [[PWY-5670]], epoxysqualene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5670 PWY-5670]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-7219]]
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* [[PWY-7205]]
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* [[PWY-7197]]
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* [[PWY-7176]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=4561360}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32302 32302]
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32296 32296]
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{{#set: right end position=4565982}}
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* LIGAND-RXN:
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{{#set: centisome position=69.52839    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R06223 R06223]
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{{#set: common name=Esi_0189_0070|Esi0189_0070}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ADENYL-KIN-RXN|RXN-11832|RXN-12002|RXN-7913}}
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{{#set: common name=Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs}}
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{{#set: pathway associated=PWY-7219|PWY-7205|PWY-7197|PWY-7176}}
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{{#set: ec number=EC-2.5.1.21}}
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{{#set: gene associated=Ec-11_001030}}
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{{#set: in pathway=PWY-5670}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:16, 21 March 2018

Gene Ec-14_004920

  • left end position:
    • 4561360
  • transcription direction:
    • POSITIVE
  • right end position:
    • 4565982
  • centisome position:
    • 69.52839
  • Synonym(s):
    • Esi_0189_0070
    • Esi0189_0070

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-14_004920&oldid=25752"