Difference between revisions of "RXN-8675"

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(Created page with "Category:Gene == Gene Ec-10_006110 == * left end position: ** 6197821 * transcription direction: ** POSITIVE * right end position: ** 6217558 * centisome position: ** 95.3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8675 RXN-8675] == * direction: ** LEFT-TO-RIGHT * common name: ** Tetrapyrrole methylase, subdo...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-10_006110 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8675 RXN-8675] ==
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* left end position:
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* direction:
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** 6197821
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Tetrapyrrole methylase, subdomain 2
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* right end position:
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** 6217558
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* centisome position:
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** 95.33665   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0006_0183
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** uroporphyrinogen methyltransferase
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** Esi0006_0183
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** uroporphyrinogen-III methyltransferase
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** CPS
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** adenosylmethionine-uroporphyrinogen III methyltransferase
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** S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase
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** SirA
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** CysG
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** uroporphyrin-III C-methyltransferase (incorrect)
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** S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase (incorrect)
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[CARBPSYN-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[CPD-9038]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c]
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***go-term
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* With common name(s):
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* [[GLUTAMIN-RXN]]
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** 1 precorrin-1[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 precorrin-2[c]
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** esiliculosus_genome
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***go-term
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== Genes associated with this reaction  ==
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* [[RXN-13202]]
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Genes have been associated with this reaction based on different elements listed below.
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** esiliculosus_genome
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* Gene: [[Ec-06_004170]]
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***go-term
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN-14196]]
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*** Assignment: EC-NUMBER
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** esiliculosus_genome
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== Pathways ==
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***go-term
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* [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7376 PWY-7376]
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* [[RXN-16909]]
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** '''2''' reactions found over '''13''' reactions in the full pathway
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** esiliculosus_genome
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* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7377 PWY-7377]
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***go-term
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** '''3''' reactions found over '''15''' reactions in the full pathway
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* [[RXN-16910]]
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* [[PWY-5194]], siroheme biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5194 PWY-5194]
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** esiliculosus_genome
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** '''3''' reactions found over '''4''' reactions in the full pathway
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***go-term
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* [[PWY-5196]], factor 430 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5196 PWY-5196]
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== Pathways associated ==
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-4984]]
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== Reconstruction information  ==
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* [[GLUTAMINDEG-PWY]]
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* Category: [[annotation]]
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* [[ARGSYN-PWY]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY-5154]]
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*** Tool: [[pathwaytools]]
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* [[ARGSYNBSUB-PWY]]
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* [[PWY-7693]]
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* [[PWY-7400]]
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* [[PWY-5686]]
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* [[CITRULBIO-PWY]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=6197821}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21972 21972]
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{{#set: right end position=6217558}}
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* LIGAND-RXN:
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{{#set: centisome position=95.33665    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R07238 R07238]
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{{#set: common name=Esi_0006_0183|Esi0006_0183|CPS}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=CARBPSYN-RXN|GLUTAMIN-RXN|RXN-13202|RXN-14196|RXN-16909|RXN-16910}}
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{{#set: common name=Tetrapyrrole methylase, subdomain 2}}
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{{#set: pathway associated=PWY-4984|GLUTAMINDEG-PWY|ARGSYN-PWY|PWY-5154|ARGSYNBSUB-PWY|PWY-7693|PWY-7400|PWY-5686|CITRULBIO-PWY}}
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{{#set: common name=uroporphyrinogen methyltransferase|uroporphyrinogen-III methyltransferase|adenosylmethionine-uroporphyrinogen III methyltransferase|S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase|SirA|CysG|uroporphyrin-III C-methyltransferase (incorrect)|S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase (incorrect)}}
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{{#set: gene associated=Ec-06_004170}}
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{{#set: in pathway=PWY-7376|PWY-7377|PWY-5194|PWY-5196}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:18, 21 March 2018

Reaction RXN-8675

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Tetrapyrrole methylase, subdomain 2
  • Synonym(s):
    • uroporphyrinogen methyltransferase
    • uroporphyrinogen-III methyltransferase
    • adenosylmethionine-uroporphyrinogen III methyltransferase
    • S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase
    • SirA
    • CysG
    • uroporphyrin-III C-methyltransferase (incorrect)
    • S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase (incorrect)

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7376, cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): PWY-7376
    • 2 reactions found over 13 reactions in the full pathway
  • PWY-7377, cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): PWY-7377
    • 3 reactions found over 15 reactions in the full pathway
  • PWY-5194, siroheme biosynthesis: PWY-5194
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5196, factor 430 biosynthesis: PWY-5196
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-8675&oldid=25972"