Difference between revisions of "RIB5PISOM-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIOHBUTANONEPSYN-RXN DIOHBUTANONEPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 3,4-d...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] == * direction: ** REVERSIBLE * common name: ** Ribose 5-phosphate iso...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIOHBUTANONEPSYN-RXN DIOHBUTANONEPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** 3,4-dihydroxy-2-butanone-4-phosphate synthase
+
** Ribose 5-phosphate isomerase, type A
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.99.12 EC-4.1.99.12]
+
** [http://enzyme.expasy.org/EC/5.3.1.6 EC-5.3.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[RIBULOSE-5P]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c]
+
** 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-ribulose 5-phosphate[c] '''=>''' 1 formate[c] '''+''' 1 H+[c] '''+''' 1 1-deoxy-L-glycero-tetrulose 4-phosphate[c]
+
** 1 D-ribose 5-phosphate[c] '''<=>''' 1 D-ribulose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-27_004040]]
+
* Gene: [[Ec-08_003540]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
+
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
** '''12''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''13''' reactions found over '''13''' reactions in the full pathway
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
+
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18457 18457]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14657 14657]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07281 R07281]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: common name=3,4-dihydroxy-2-butanone-4-phosphate synthase}}
+
** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
−
{{#set: ec number=EC-4.1.99.12}}
+
** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
−
{{#set: gene associated=Ec-27_004040}}
+
** [http://www.uniprot.org/uniprot/P44725 P44725]
−
{{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}}
+
** [http://www.uniprot.org/uniprot/Q58998 Q58998]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P37351 P37351]
 +
** [http://www.uniprot.org/uniprot/P74234 P74234]
 +
** [http://www.uniprot.org/uniprot/Q55766 Q55766]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Ribose 5-phosphate isomerase, type A}}
 +
{{#set: ec number=EC-5.3.1.6}}
 +
{{#set: gene associated=Ec-08_003540}}
 +
{{#set: in pathway=P124-PWY|CALVIN-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:18, 21 March 2018

Reaction RIB5PISOM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Ribose 5-phosphate isomerase, type A
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-ribose 5-phosphate[c] <=> 1 D-ribulose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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