Difference between revisions of "MALSYN-RXN"

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(Created page with "Category:Gene == Gene Ec-23_001220 == * left end position: ** 1225014 * transcription direction: ** POSITIVE * right end position: ** 1230231 * centisome position: ** 25.3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Malate synthase * ec numb...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-23_001220 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] ==
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* left end position:
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* direction:
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** 1225014
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Malate synthase
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* right end position:
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* ec number:
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** 1230231
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** [http://enzyme.expasy.org/EC/2.3.3.9 EC-2.3.3.9]
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* centisome position:
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** 25.312992   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0017_0193
 
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** Esi0017_0193
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[DIHYDROKAEMPFEROL-4-REDUCTASE-RXN]]
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* With identifiers:
 +
** 1 [[ACETYL-COA]][c] '''+''' 1 [[GLYOX]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[MAL]][c] '''+''' 1 [[CO-A]][c]
 +
* With common name(s):
 +
** 1 acetyl-CoA[c] '''+''' 1 glyoxylate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 (S)-malate[c] '''+''' 1 coenzyme A[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-12_003860]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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*** Assignment: EC-NUMBER
 
** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
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* Reaction: [[RXN-1101]]
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== Pathways  ==
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* [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7294]], xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXDEG-PWY GLYOXDEG-PWY]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 
** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
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* Reaction: [[RXN-1106]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-aragem]]
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* Category: [[annotation]]
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* Reaction: [[RXN-1124]]
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** Source: [[orthology-aragem]]
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* Reaction: [[RXN-17678]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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*** Tool: [[pathwaytools]]
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* Reaction: [[RXN-600]]
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−
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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−
** Source: [[orthology-aragem]]
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* Reaction: [[RXN-7784]]
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−
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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−
** Source: [[orthology-aragem]]
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* Reaction: [[RXN-9725]]
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−
** Source: [[orthology-aragem]]
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== Pathways associated ==
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* [[PWY-6027]]
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* [[PWY-361]]
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* [[PWY-5152]]
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* [[PWY1F-823]]
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* [[PWY-6035]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=1225014}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18181 18181]
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{{#set: right end position=1230231}}
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* PIR:
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{{#set: centisome position=25.312992    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715]
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{{#set: common name=Esi_0017_0193|Esi0017_0193}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195]
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{{#set: reaction associated=DIHYDROKAEMPFEROL-4-REDUCTASE-RXN|RXN-1101|RXN-1106|RXN-1124|RXN-17678|RXN-600|RXN-7784|RXN-9725}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196]
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{{#set: pathway associated=PWY-6027|PWY-361|PWY-5152|PWY1F-823|PWY-6035}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P42450 P42450]
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** [http://www.uniprot.org/uniprot/Q02216 Q02216]
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** [http://www.uniprot.org/uniprot/P28344 P28344]
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** [http://www.uniprot.org/uniprot/P28345 P28345]
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** [http://www.uniprot.org/uniprot/P30952 P30952]
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** [http://www.uniprot.org/uniprot/Q43827 Q43827]
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** [http://www.uniprot.org/uniprot/P21826 P21826]
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** [http://www.uniprot.org/uniprot/P37330 P37330]
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** [http://www.uniprot.org/uniprot/P17432 P17432]
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** [http://www.uniprot.org/uniprot/P17815 P17815]
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** [http://www.uniprot.org/uniprot/P08997 P08997]
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** [http://www.uniprot.org/uniprot/P21360 P21360]
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** [http://www.uniprot.org/uniprot/P08216 P08216]
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** [http://www.uniprot.org/uniprot/P13244 P13244]
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** [http://www.uniprot.org/uniprot/P49081 P49081]
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** [http://www.uniprot.org/uniprot/P45458 P45458]
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** [http://www.uniprot.org/uniprot/O32913 O32913]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Malate synthase}}
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{{#set: ec number=EC-2.3.3.9}}
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{{#set: gene associated=Ec-12_003860}}
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{{#set: in pathway=PWY-7295|PWY-7294|GLYOXDEG-PWY|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|PWY-7118}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:18, 21 March 2018

Reaction MALSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Malate synthase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 acetyl-CoA[c] + 1 glyoxylate[c] + 1 H2O[c] => 1 H+[c] + 1 (S)-malate[c] + 1 coenzyme A[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7295, L-arabinose degradation IV: PWY-7295
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7294, xylose degradation IV: PWY-7294
    • 3 reactions found over 7 reactions in the full pathway
  • GLYOXDEG-PWY, glycolate and glyoxylate degradation II: GLYOXDEG-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol: PWY-7118
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=MALSYN-RXN&oldid=26021"