Difference between revisions of "RXN-2562"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7046 PWY-7046] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2562 RXN-2562] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7046 PWY-7046] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2562 RXN-2562] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
* common name:
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* ec number:
** 4-coumarate degradation (anaerobic)
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** [http://enzyme.expasy.org/EC/2.1.1.95 EC-2.1.1.95]
 
* Synonym(s):
 
* Synonym(s):
** p-coumarate degradation (anaerobic)
 
  
== Reaction(s) found ==
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== Reaction Formula ==
'''2''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
* [[4-COUMARATE--COA-LIGASE-RXN]]
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** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[DELTA-TOCOPHEROL]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[BETA-TOCOPHEROL]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
** 2 associated gene(s):
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* With common name(s):
*** [[Ec-04_001280]]
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** 1 S-adenosyl-L-methionine[c] '''+''' 1 δ-tocopherol[c] '''=>''' 1 H+[c] '''+''' 1 β-tocopherol[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
*** [[Ec-10_001480]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
*** [[orthology-aragem]]
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Genes have been associated with this reaction based on different elements listed below.
* [[RXN-11244]]
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* Gene: [[Ec-18_000910]]
** 4 associated gene(s):
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** Source: [[orthology-aragem]]
*** [[Ec-16_003560]]
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== Pathways  ==
*** [[Ec-06_001380]]
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* [[PWY-1422]], vitamin E biosynthesis (tocopherols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422]
*** [[Ec-16_001250]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
*** [[Ec-14_006530]]
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== Reconstruction information  ==
** 1 reconstruction source(s) associated:
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* Category: [[orthology]]
*** [[annotation-esiliculosus_genome]]
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** Source: [[orthology-aragem]]
== Reaction(s) not found ==
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*** Tool: [[pantograph]]
* [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXYBENZOATE--COA-LIGASE-RXN 4-HYDROXYBENZOATE--COA-LIGASE-RXN]
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* Category: [[annotation]]
* [http://metacyc.org/META/NEW-IMAGE?object=OHBENZCOARED-RXN OHBENZCOARED-RXN]
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** Source: [[annotation-esiliculosus_genome]]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13392 RXN-13392]
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*** Tool: [[pathwaytools]]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13394 RXN-13394]
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== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
{{#set: common name=4-coumarate degradation (anaerobic)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07504 R07504]
{{#set: common name=p-coumarate degradation (anaerobic)}}
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{{#set: direction=LEFT-TO-RIGHT}}
{{#set: reaction found=2}}
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{{#set: ec number=EC-2.1.1.95}}
{{#set: total reaction=6}}
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{{#set: gene associated=Ec-18_000910}}
{{#set: completion rate=33.0}}
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{{#set: in pathway=PWY-1422}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:21, 21 March 2018

Reaction RXN-2562

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1422, vitamin E biosynthesis (tocopherols): PWY-1422
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links